HHsearch alignment for GI: 254780877 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.28 E-value=2.4e-05 Score=62.41 Aligned_cols=175 Identities=21% Similarity=0.369 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHC---CCCC---CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----C
Q ss_conf 3335789999999633---6777---866895288740777999999987348998444574378873135421-----7
Q gi|254780877|r 180 VIGRDDEMRRAIQVLS---RRTK---NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-----G 248 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~---r~~k---~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----g 248 (853)
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 56711689999999999986146788579997899887011899999995----------89779995476542777535
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCC-HH---HHHHHH---------HC-C---CCEE
Q ss_conf --4542024545899999986079976999636277302666554335-88---887653---------12-4---6604
Q gi|254780877|r 249 --AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMD-AS---NLLKPS---------LA-R---GELH 309 (853)
Q Consensus 249 --~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~D-aa---n~LKP~---------La-r---G~l~ 309 (853)
T Consensus 395 HRRTYIGaMPGrIiQ~mkka~~~N-Pv~-LLDEIDKm~----ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKN-PVF-LLDEIDKMG----SSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CEE-EEECHHHCC----CCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEE
T ss_conf 531233568728999999867768-747-864033316----77778868888862697656761222016766443258
Q ss_pred EEEEECHHHHHHHHHC-CHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHHHH
Q ss_conf 8997448999997300-11132023111115777678999999-97898654149-----61015899999863
Q gi|254780877|r 310 CIGATTLDEYRKYIEK-DPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAAVL 376 (853)
Q Consensus 310 ~IgaTT~~Eyrk~iEk-D~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av~l 376 (853)
T Consensus 469 Fi--aT-AN---sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~ 536 (782)
T COG0466 469 FI--AT-AN---SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY 536 (782)
T ss_pred EE--EE-CC---CCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHH
T ss_conf 88--60-37---51329867843030564268886999999998445689997599823355658999999998