HHsearch alignment for GI: 254780877 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.26 E-value=0.0085 Score=41.68 Aligned_cols=180 Identities=19% Similarity=0.352 Sum_probs=112.2
Q ss_pred HHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH------------H
Q ss_conf 9996336--7778668952887407779999999873489984445743788731354217454202------------4
Q gi|254780877|r 190 AIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE------------F 255 (853)
Q Consensus 190 ~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~------------~ 255 (853)
T Consensus 82 ldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 82 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC--------CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEH
T ss_conf 8765367723661799736898779899999999987059--------57999677678999999998289964557741
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC--CCCCCCC-----HHHHHHHHHCCCCE-EEEEEECHHHHHHHHHCCH
Q ss_conf 54589999998607997699963627730266--6554335-----88887653124660-4899744899999730011
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAG--KTDGAMD-----ASNLLKPSLARGEL-HCIGATTLDEYRKYIEKDP 327 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG--~~~g~~D-----aan~LKP~LarG~l-~~IgaTT~~Eyrk~iEkD~ 327 (853)
T Consensus 154 Et~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG---------HVTKeG 223 (456)
T COG1066 154 ETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG---------HVTKEG 223 (456)
T ss_pred HCCHHHHHHHHHHC-CCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE---------EECCCC
T ss_conf 12899999999854-99789996541230263357998589999999999999987597399998---------882466
Q ss_pred HH------HHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 13------20231111157776789999999789865414961---01589999986333202457674
Q gi|254780877|r 328 AL------ARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVR---ISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 328 Al------~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~---i~d~al~~av~ls~rYi~~r~lP 387 (853)
T Consensus 224 ~IAGPrvLEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~ 292 (456)
T COG1066 224 AIAGPRVLEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQ 292 (456)
T ss_pred CCCCCHHEEEEEEEEEEEECCCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCC
T ss_conf 326840043653689998305777556500321367765532688984388468038278674226778