HHsearch alignment for GI: 254780877 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.19 E-value=8e-05 Score=58.16 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=54.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----HHCCC
Q ss_conf 7778668952887407779999999873489984445743788731354217454202-454589999998----60799
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-FEERLKSLLCEI----RSEDG 271 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-~e~r~~~i~~~~----~~~~~ 271 (853)
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADAT-------t-LTEAGYVGEDVENillkLlqaadydV~rAe- 162 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADAT-------T-LTEAGYVGEDVENILLKLLQAADYDVERAE- 162 (408)
T ss_pred EEECCEEEECCCCCCHHHHHHHHHHHH---CCCEEECCCC-------C-HHHCCCCCHHHHHHHHHHHHHCCCCHHHHH-
T ss_conf 320317998889975779999999984---8984751444-------1-210663550089999999987645888882-
Q ss_pred CEEEEECCHHHHC
Q ss_conf 7699963627730
Q gi|254780877|r 272 EIILFIDELHVLV 284 (853)
Q Consensus 272 ~~ilfide~h~~~ 284 (853)
T Consensus 163 rGIIyIDEIDKIa 175 (408)
T COG1219 163 RGIIYIDEIDKIA 175 (408)
T ss_pred CCEEEEECHHHHH
T ss_conf 8859985102542