HHsearch alignment for GI: 254780877 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.49  E-value=3.9e-12  Score=117.57  Aligned_cols=96  Identities=22%  Similarity=0.427  Sum_probs=74.8

Q ss_pred             CCHHHHCCCCCEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCCHHHHH
Q ss_conf             8857726668158628899899999999----999999999985798999988999999970898-----2206215799
Q gi|254780877|r  744 FKPEFLNRLDEIILFEKLRKEDMAKIVR----IQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD-----PSYGARPLKR  814 (853)
Q Consensus       744 f~peflnRid~iv~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GaR~l~r  814 (853)
T Consensus       319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT  398 (444)
T COG1220         319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT  398 (444)
T ss_pred             CCHHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             17666277734887044899899999637607899999999731583488537999999999998554300011788999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99987334999999708688978899999
Q gi|254780877|r  815 VIQRYIQNPLAERVLSQTISDGDSIEVFV  843 (853)
Q Consensus       815 ~i~~~i~~~la~~il~~~~~~g~~i~i~~  843 (853)
T Consensus       399 vlErlLed----iSFeA~d~~g~~v~Id~  423 (444)
T COG1220         399 VLERLLED----ISFEAPDMSGQKVTIDA  423 (444)
T ss_pred             HHHHHHHH----HCCCCCCCCCCEEEECH
T ss_conf             99999987----07058778997589758