HHsearch alignment for GI: 254780877 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.49 E-value=3.9e-12 Score=117.57 Aligned_cols=96 Identities=22% Similarity=0.427 Sum_probs=74.8
Q ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCCHHHHH
Q ss_conf 8857726668158628899899999999----999999999985798999988999999970898-----2206215799
Q gi|254780877|r 744 FKPEFLNRLDEIILFEKLRKEDMAKIVR----IQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD-----PSYGARPLKR 814 (853)
Q Consensus 744 f~peflnRid~iv~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GaR~l~r 814 (853)
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred CCHHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 17666277734887044899899999637607899999999731583488537999999999998554300011788999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99987334999999708688978899999
Q gi|254780877|r 815 VIQRYIQNPLAERVLSQTISDGDSIEVFV 843 (853)
Q Consensus 815 ~i~~~i~~~la~~il~~~~~~g~~i~i~~ 843 (853)
T Consensus 399 vlErlLed----iSFeA~d~~g~~v~Id~ 423 (444)
T COG1220 399 VLERLLED----ISFEAPDMSGQKVTIDA 423 (444)
T ss_pred HHHHHHHH----HCCCCCCCCCCEEEECH
T ss_conf 99999987----07058778997589758