HHsearch alignment for GI: 254780877 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=99.24 E-value=7.1e-10 Score=99.24 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=149.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHCCC
Q ss_conf 554776745948999999999987410123656651289872678616889999999872377--653002244774034
Q gi|254780877|r 563 ETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRIDMSEYMEK 640 (853)
Q Consensus 563 ~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~--~~~lir~dMsey~e~ 640 (853)
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----~ap~~~~v---Li~GetGtGKel~A~~iH-~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----YAPSGLPV---LIIGETGTGKELFARLIH-ALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHH----HCCCCCCE---EEECCCCCCHHHHHHHHH-HHHHCCCCCCEEEEEHHHHCCC
T ss_conf 221566663568889999999986----18999847---986688753889999999-8612135898799777773767
Q ss_pred CCCCHHHCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECC
Q ss_conf 532013047711203566774211322156-------4102202144149899999999840457887---999778303
Q gi|254780877|r 641 HSVSRLIGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFR 710 (853)
Q Consensus 641 ~~vs~LiGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~ 710 (853)
T Consensus 145 ~~~~eLFG~~k--------GaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR 216 (403)
T COG1221 145 LQEAELFGHEK--------GAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR 216 (403)
T ss_pred HHHHHHHCCCC--------CEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCE
T ss_conf 77777732000--------0002566786764205279777656365379858999999987186576688888677740
Q ss_pred CCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHC-CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 3155954851268764032679999999998628857726-668158628899899999999999999999985798999
Q gi|254780877|r 711 NTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLN-RLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789 (853)
Q Consensus 711 n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefln-Rid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 789 (853)
T Consensus 217 ---li~AT~~----------~l~----~~~~~g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~e~Fl~~~~~~l~~~~~ 276 (403)
T COG1221 217 ---LICATTE----------DLE----EAVLAG--ADLTRRLNILTITLPPLRER-KEDILLLAEHFLKSEARRLGLPLS 276 (403)
T ss_pred ---EEECCCC----------CHH----HHHHHH--CCHHHHHCCCEECCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ---4513566----------879----998740--52556416754318972435-555999999999999997399988
Q ss_pred EC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98-8999999970898220621579999987334
Q gi|254780877|r 790 FD-DQVIDWLSCRGYDPSYGARPLKRVIQRYIQN 822 (853)
Q Consensus 790 ~~-~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~ 822 (853)
T Consensus 277 ~~~~~a~~~L~--~y~~pGNirELkN~Ve~~~~~ 308 (403)
T COG1221 277 VDSPEALRALL--AYDWPGNIRELKNLVERAVAQ 308 (403)
T ss_pred CCCHHHHHHHH--HCCCCCCHHHHHHHHHHHHHH
T ss_conf 88899999998--488998399999999999997