HHsearch alignment for GI: 254780877 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=99.06 E-value=3.3e-09 Score=93.78 Aligned_cols=201 Identities=26% Similarity=0.459 Sum_probs=123.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCC-----CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
Q ss_conf 767459489999999999874101236566-----512898726786168899999998723776530022447740345
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQR-----PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKH 641 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~-----p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~ 641 (853)
T Consensus 120 ~ddViGqEeAK~kcrli~~y----LenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~---kvp~l~v--------- 182 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEY----LENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEA---KVPLLLV--------- 182 (368)
T ss_pred HHHHHCHHHHHHHHHHHHHH----HHCHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHCCC---CCCEEEE---------
T ss_conf 76641639888887999999----6496876345754-16877899964879999872545---7854871---------
Q ss_pred CCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHCC------------HHHHHHHHHHHHCCEEECCCCCEE
Q ss_conf 320130477112035667--742113221564102202144149------------899999999840457887999778
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKAH------------SDVHNILLQVLDDGRLTDSQGRTV 707 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKah------------~~v~~~llqild~G~ltd~~G~~v 707 (853)
T Consensus 183 kat~liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-gi-~eneG--- 254 (368)
T COG1223 183 KATELIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-GI-KENEG--- 254 (368)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CC-CCCCC---
T ss_conf 1688888---7743598999999998875198499840024555304578864549999999998501-74-45775---
Q ss_pred ECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 30331559548512687640326799999999986288577266681586288998999999999999999999857989
Q gi|254780877|r 708 DFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNIS 787 (853)
Q Consensus 708 ~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~ 787 (853)
T Consensus 255 ----VvtIaaTN~--------p~------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-------~Plp 303 (368)
T COG1223 255 ----VVTIAATNR--------PE------------LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-------FPLP 303 (368)
T ss_pred ----EEEEEECCC--------HH------------HCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH-------CCCC
T ss_conf ----699950598--------46------------5078888655650656488858999999998985-------8976
Q ss_pred EEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99988999999970898220621579999987334999999708
Q gi|254780877|r 788 MDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQ 831 (853)
Q Consensus 788 l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~ 831 (853)
T Consensus 304 v~~~---~~~~~~~--t~g~SgRdik---ekvlK~aLh~Ai~ed 339 (368)
T COG1223 304 VDAD---LRYLAAK--TKGMSGRDIK---EKVLKTALHRAIAED 339 (368)
T ss_pred CCCC---HHHHHHH--HCCCCCHHHH---HHHHHHHHHHHHHHC
T ss_conf 5568---9999998--4787720689---999999999998713