HHsearch alignment for GI: 254780877 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.97 E-value=0.00023 Score=54.40 Aligned_cols=203 Identities=19% Similarity=0.311 Sum_probs=121.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHC----------CCCCHHHCCCEEEEEEHH
Q ss_conf 853333357899999996336--77786689528874077799999998734----------899844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIIN----------GDIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~----------~~vp~~l~~~~i~~ld~~ 243 (853)
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 56775206999999999999984779978997789875899999998607445899256334648988877776145656
Q ss_pred HHHCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHCCC-------------CE
Q ss_conf 54217-45420245458999999860799769996362773026665543358-88876531246-------------60
Q gi|254780877|r 244 ALIAG-AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLARG-------------EL 308 (853)
Q Consensus 244 ~l~ag-~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~LarG-------------~l 308 (853)
T Consensus 219 AFTGA~~~r~G~fE~-----------A~GG-TLfLDEI~~m--------pl~~Q~kLLR-vLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 219 AFTGAITRRIGRFEQ-----------ANGG-TLFLDEIGEM--------PLELQVKLLR-VLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred CCCCCCCCCCCCEEE-----------CCCC-EEEEECCCCC--------CHHHHHHHHH-HHHCCEEEECCCCCEECEEE
T ss_conf 767764345761577-----------3796-5873231109--------9999999999-98707067358886000016
Q ss_pred EEEEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 489974489999973001---113202311111577767899999997898654149610158999998633320-2457
Q gi|254780877|r 309 HCIGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITDR 384 (853)
Q Consensus 309 ~~IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~r 384 (853)
T Consensus 278 RiIaaT~~dL-~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hf---------------l~~~~~~~~~~~~ 341 (464)
T COG2204 278 RIIAATNRDL-EEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHF---------------LKRFAAELGRPPK 341 (464)
T ss_pred EEEEECCCCH-HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHH---------------HHHHHHHHCCCCC
T ss_conf 9996057789-99988197378888652331104876223620079999999---------------9999998099988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 6747789999999998754102221457887999997445
Q gi|254780877|r 385 FLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKI 424 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~ 424 (853)
T Consensus 342 ~~s~~---------a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 342 GFSPE---------ALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred CCCHH---------HHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 87999---------99999738998189999999999985