HHsearch alignment for GI: 254780877 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=98.65 E-value=1.9e-07 Score=79.54 Aligned_cols=200 Identities=24% Similarity=0.308 Sum_probs=125.7
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCC--CCHHHCCC----------
Q ss_conf 6998729853333357899999996336777-8668952887407779999999873489--98444574----------
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGD--IPESLKGK---------- 235 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~--vp~~l~~~---------- 235 (853)
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98858300777636489999999999808423336513777767104999999995688987777225316668651488
Q ss_pred --EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCC--CC
Q ss_conf --37887313542174542024545899999986079---976999636277302666554335888-87653124--66
Q gi|254780877|r 236 --RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASN-LLKPSLAR--GE 307 (853)
Q Consensus 236 --~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan-~LKP~Lar--G~ 307 (853)
T Consensus 87 ~~DviEiDaASn------~gV--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLK-TLEEPP~h 149 (515)
T COG2812 87 LIDVIEIDAASN------TGV--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLK-TLEEPPSH 149 (515)
T ss_pred CCCCHHHHHHHC------CCH--HHHHHHHHHHCCCCCCCCCEEEEEECHHHHH--------HHHHHHHHC-CCCCCCCC
T ss_conf 641011364445------486--7999999872468866664189983187643--------788888751-11368667
Q ss_pred EEEEEEECHHHHHHHHHCCHH-HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 048997448999997300111-3202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPA-LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~A-l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
T Consensus 150 V~FIlATTe--~~K----ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~RD--- 216 (515)
T COG2812 150 VKFILATTE--PQK----IPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSLRD--- 216 (515)
T ss_pred EEEEEECCC--CCC----CCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 489985388--676----8404552122022257999999999999987----448754799999999982897456---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
T Consensus 217 ---alslLDq~i~~~ 228 (515)
T COG2812 217 ---ALSLLDQAIAFG 228 (515)
T ss_pred ---HHHHHHHHHHCC
T ss_conf ---777899999706