HHsearch alignment for GI: 254780877 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=97.42 E-value=0.019 Score=38.92 Aligned_cols=200 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHH----HCCCCHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC---CHHHHH-HHHHHHH-H
Q ss_conf 87025999876687----27751788999-7599989999999987377887877754676---107886-4435699-8
Q gi|254780877|r 103 DSFVTAEKFLLAMV----METGGIGESLK-KCGLKFSRLEESIKKLRKGRVADSVNAEQGF---DALKKY-CRDLTEE-A 172 (853)
Q Consensus 103 ~~~I~~ehLLlAIl----~e~~s~a~iL~-~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~---~~L~ky-~~DLTe~-A 172 (853)
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa 95 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA 95 (515)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 77636489999999999808423336513777767104999999995688987777225316668651488641011364
Q ss_pred HCCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---EHHHHH
Q ss_conf 7298533333578999999963---3677786689528874077799999998734899844457437887---313542
Q gi|254780877|r 173 RNGKLDPVIGRDDEMRRAIQVL---SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---DMGALI 246 (853)
Q Consensus 173 r~GkLDPVIGRe~EI~~~~~iL---~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---d~~~l~ 246 (853)
T Consensus 96 ASn~-----g-VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~---hV~FIlATTe~~Kip 163 (515)
T COG2812 96 ASNT-----G-VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPS---HVKFILATTEPQKIP 163 (515)
T ss_pred HHCC-----C-HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC---CCC---CEEEEEECCCCCCCC
T ss_conf 4454-----8-679999998724688666641899831876437888887511136---866---748998538867684
Q ss_pred CCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 17454202-------45458999999860799769996362773026665543-35888876531246604899744899
Q gi|254780877|r 247 AGAKFRGE-------FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 247 ag~~~rg~-------~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia-~~a~Gs~RDalslLDq~i~~~~----~~It~~~ 236 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIA-RAAEGSLRDALSLLDQAIAFGE----GEITLES 236 (515)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCC----CCCCHHH
T ss_conf 04552122022257999999999999987448--754799999999-9828974567778999997067----7656999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780877|r 319 YRK 321 (853)
Q Consensus 319 yrk 321 (853)
T Consensus 237 v~~ 239 (515)
T COG2812 237 VRD 239 (515)
T ss_pred HHH
T ss_conf 999