HHsearch alignment for GI: 254780877 and conserved domain: COG2812

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=97.42  E-value=0.019  Score=38.92  Aligned_cols=200  Identities=18%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             CCCCCHHHHHHHHH----HCCCCHHHHHH-HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC---CHHHHH-HHHHHHH-H
Q ss_conf             87025999876687----27751788999-7599989999999987377887877754676---107886-4435699-8
Q gi|254780877|r  103 DSFVTAEKFLLAMV----METGGIGESLK-KCGLKFSRLEESIKKLRKGRVADSVNAEQGF---DALKKY-CRDLTEE-A  172 (853)
Q Consensus       103 ~~~I~~ehLLlAIl----~e~~s~a~iL~-~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~---~~L~ky-~~DLTe~-A  172 (853)
T Consensus        16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa   95 (515)
T COG2812          16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA   95 (515)
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             77636489999999999808423336513777767104999999995688987777225316668651488641011364


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---EHHHHH
Q ss_conf             7298533333578999999963---3677786689528874077799999998734899844457437887---313542
Q gi|254780877|r  173 RNGKLDPVIGRDDEMRRAIQVL---SRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---DMGALI  246 (853)
Q Consensus       173 r~GkLDPVIGRe~EI~~~~~iL---~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---d~~~l~  246 (853)
T Consensus        96 ASn~-----g-VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~---hV~FIlATTe~~Kip  163 (515)
T COG2812          96 ASNT-----G-VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPS---HVKFILATTEPQKIP  163 (515)
T ss_pred             HHCC-----C-HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC---CCC---CEEEEEECCCCCCCC
T ss_conf             4454-----8-679999998724688666641899831876437888887511136---866---748998538867684


Q ss_pred             CCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf             17454202-------45458999999860799769996362773026665543-35888876531246604899744899
Q gi|254780877|r  247 AGAKFRGE-------FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCIGATTLDE  318 (853)
Q Consensus       247 ag~~~rg~-------~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~IgaTT~~E  318 (853)
T Consensus       164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia-~~a~Gs~RDalslLDq~i~~~~----~~It~~~  236 (515)
T COG2812         164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIA-RAAEGSLRDALSLLDQAIAFGE----GEITLES  236 (515)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCC----CCCCHHH
T ss_conf             04552122022257999999999999987448--754799999999-9828974567778999997067----7656999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780877|r  319 YRK  321 (853)
Q Consensus       319 yrk  321 (853)
T Consensus       237 v~~  239 (515)
T COG2812         237 VRD  239 (515)
T ss_pred             HHH
T ss_conf             999