HHsearch alignment for GI: 254780877 and conserved domain: COG3283
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].
Probab=98.24 E-value=0.00011 Score=57.02 Aligned_cols=219 Identities=19% Similarity=0.310 Sum_probs=144.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~----AmlDAP---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL----AMLDAP---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 77873039999999999865----403787---68744888618899998744384558973676447796667677773
Q ss_pred CCCCH---HCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 47711---203566774211322156410220214414989999999984045788799977830331559548512687
Q gi|254780877|r 648 GSPPG---YVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 648 GappG---YvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
T Consensus 277 G~apg~~gk~GffE---------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~ 347 (511)
T COG3283 277 GHAPGDEGKKGFFE---------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVE 347 (511)
T ss_pred CCCCCCCCCCCHHH---------HCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHH
T ss_conf 56888777634634---------026974885003324998999999986277600037754578778999616666999
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEE--CCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 640326799999999986288577266681586--28899--89999999999999999998579899998899999997
Q gi|254780877|r 725 LIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIIL--FEKLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSC 800 (853)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~--F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 800 (853)
T Consensus 348 -------------lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~~~~~~L~~ 411 (511)
T COG3283 348 -------------LVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGV--PRPKLAADLLTVLTR 411 (511)
T ss_pred -------------HHHCCCHHHHHHHHHH-EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHH
T ss_conf -------------9863725887887750-134238850006521068999999999997589--987668789999987
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 08982206215799999873
Q gi|254780877|r 801 RGYDPSYGARPLKRVIQRYI 820 (853)
Q Consensus 801 ~~~~~~~GaR~l~r~i~~~i 820 (853)
T Consensus 412 y~W--pGNVRqL~N~iyRA~ 429 (511)
T COG3283 412 YAW--PGNVRQLKNAIYRAL 429 (511)
T ss_pred CCC--CCCHHHHHHHHHHHH
T ss_conf 799--960999999999999