HHsearch alignment for GI: 254780877 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=98.99 E-value=5.4e-08 Score=83.93 Aligned_cols=216 Identities=22% Similarity=0.375 Sum_probs=164.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 223 ~~iIG~S~am~~ll~~i~~V----A~Sd~---tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVV----AKSDS---TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred CCCCCCCHHHHHHHHHHHHH----HCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 56230699999999999987----26898---079845888538999999987375557986663122253788888874
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf 47711203566774211322156-------4102202144149899999999840457887---9997783033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T 717 (853)
T Consensus 296 G-------HeK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD---VRiIAA 364 (550)
T COG3604 296 G-------HEK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD---VRVIAA 364 (550)
T ss_pred C-------CCC-CCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEE---EEEEEC
T ss_conf 5-------332-23335101467635655797576022036787788999999863652534799636777---899821
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEEC--CCCC--HHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
Q ss_conf 85126876403267999999999-862885772666815862--8899--899999999999999999985798-99998
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILF--EKLR--KEDMAKIVRIQLGRVLSLIKERNI-SMDFD 791 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F--~~l~--~~~~~~i~~~~l~~l~~~l~~~~i-~l~~~ 791 (853)
T Consensus 365 TNR--------------DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr~~l~ls 426 (550)
T COG3604 365 TNR--------------DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGRAILSLS 426 (550)
T ss_pred CCH--------------HHHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCCCCC
T ss_conf 353--------------09999874951554532102-001378983458866799999999999886---397640339
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 899999997089822062157999998733
Q gi|254780877|r 792 DQVIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 792 ~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 427 ~~Al~~L~~--y~wPGNVRELen~veRavl 454 (550)
T COG3604 427 AEALELLSS--YEWPGNVRELENVVERAVL 454 (550)
T ss_pred HHHHHHHHC--CCCCCCHHHHHHHHHHHHH
T ss_conf 899999973--9999719999989999999