HHsearch alignment for GI: 254780877 and conserved domain: COG3604

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=98.99  E-value=5.4e-08  Score=83.93  Aligned_cols=216  Identities=22%  Similarity=0.375  Sum_probs=164.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r  568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI  647 (853)
Q Consensus       568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li  647 (853)
T Consensus       223 ~~iIG~S~am~~ll~~i~~V----A~Sd~---tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF  295 (550)
T COG3604         223 GGIIGRSPAMRQLLKEIEVV----AKSDS---TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF  295 (550)
T ss_pred             CCCCCCCHHHHHHHHHHHHH----HCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf             56230699999999999987----26898---079845888538999999987375557986663122253788888874


Q ss_pred             CCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf             47711203566774211322156-------4102202144149899999999840457887---9997783033155954
Q gi|254780877|r  648 GSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT  717 (853)
Q Consensus       648 GappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T  717 (853)
T Consensus       296 G-------HeK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD---VRiIAA  364 (550)
T COG3604         296 G-------HEK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD---VRVIAA  364 (550)
T ss_pred             C-------CCC-CCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEE---EEEEEC
T ss_conf             5-------332-23335101467635655797576022036787788999999863652534799636777---899821


Q ss_pred             CCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEEC--CCCC--HHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
Q ss_conf             85126876403267999999999-862885772666815862--8899--899999999999999999985798-99998
Q gi|254780877|r  718 SNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILF--EKLR--KEDMAKIVRIQLGRVLSLIKERNI-SMDFD  791 (853)
Q Consensus       718 sN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F--~~l~--~~~~~~i~~~~l~~l~~~l~~~~i-~l~~~  791 (853)
T Consensus       365 TNR--------------DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr~~l~ls  426 (550)
T COG3604         365 TNR--------------DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGRAILSLS  426 (550)
T ss_pred             CCH--------------HHHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCCCCC
T ss_conf             353--------------09999874951554532102-001378983458866799999999999886---397640339


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             899999997089822062157999998733
Q gi|254780877|r  792 DQVIDWLSCRGYDPSYGARPLKRVIQRYIQ  821 (853)
Q Consensus       792 ~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~  821 (853)
T Consensus       427 ~~Al~~L~~--y~wPGNVRELen~veRavl  454 (550)
T COG3604         427 AEALELLSS--YEWPGNVRELENVVERAVL  454 (550)
T ss_pred             HHHHHHHHC--CCCCCCHHHHHHHHHHHHH
T ss_conf             899999973--9999719999989999999