HHsearch alignment for GI: 254780877 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=96.07 E-value=0.012 Score=40.51 Aligned_cols=116 Identities=28% Similarity=0.512 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCC----------CCCHHHCCCEEEEEEHH
Q ss_conf 853333357899999996336--777866895288740777999999987348----------99844457437887313
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIING----------DIPESLKGKRLMALDMG 243 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~----------~vp~~l~~~~i~~ld~~ 243 (853)
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKG 300 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKG 300 (550)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 44562306999999999999872689807984588853899999998737555798666312225378888887453322
Q ss_pred HHHC-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCH-HHHHHHHHCCCCEEEEE
Q ss_conf 5421-745420245458999999860799769996362773026665543358-88876531246604899
Q gi|254780877|r 244 ALIA-GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDA-SNLLKPSLARGELHCIG 312 (853)
Q Consensus 244 ~l~a-g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Da-an~LKP~LarG~l~~Ig 312 (853)
T Consensus 301 AFTGA~~~r~GrFE-----------lAdGG-TLFLDEIGel--------PL~lQaKLL-RvLQegEieRvG 350 (550)
T COG3604 301 AFTGAINTRRGRFE-----------LADGG-TLFLDEIGEL--------PLALQAKLL-RVLQEGEIERVG 350 (550)
T ss_pred CCCCCHHCCCCCEE-----------ECCCC-EEECHHHCCC--------CHHHHHHHH-HHHHHCCEEECC
T ss_conf 33351014676356-----------55797-5760220367--------877889999-998636525347