HHsearch alignment for GI: 254780877 and conserved domain: COG3854

Probab=97.84  E-value=0.00028  Score=53.78  Aligned_cols=113  Identities=26%  Similarity=0.365  Sum_probs=83.2

Q ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH----HHHHHH--
Q ss_conf             99999963367778668952887407779999999873489984445743788731354217454202----454589--
Q gi|254780877|r  187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE----FEERLK--  260 (853)
Q Consensus       187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~----~e~r~~--  260 (853)
T Consensus       125 ~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVl  201 (308)
T COG3854         125 ANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVL  201 (308)
T ss_pred             CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--CCCCCEEEEEECCCHHHC-CCCCCCHHHHHHHHHHC
T ss_conf             218899998437224699659988707799999998631511--267732899715004303-43588603232210104


Q ss_pred             -------HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
Q ss_conf             -------999998607997699963627730266655433588887653124660489974
Q gi|254780877|r  261 -------SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT  314 (853)
Q Consensus       261 -------~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT  314 (853)
T Consensus       202 d~cpk~~gmmmaIrsm~-PEViIvDEIGt~~---------d~~A-~~ta~~~G-Vkli~Ta  250 (308)
T COG3854         202 DPCPKAEGMMMAIRSMS-PEVIIVDEIGTEE---------DALA-ILTALHAG-VKLITTA  250 (308)
T ss_pred             CCCHHHHHHHHHHHHCC-CCEEEEECCCCHH---------HHHH-HHHHHHCC-CEEEEEE
T ss_conf             65617888999999549-9579983436477---------7999-99998548-5899950