HHsearch alignment for GI: 254780877 and conserved domain: KOG0739
>KOG0739 consensus.
Probab=98.03 E-value=9.8e-05 Score=57.42 Aligned_cols=129 Identities=25% Similarity=0.433 Sum_probs=75.9
Q ss_pred HCCHHHHHHHHHHHHHHH--HCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 459489999999999874--101-23656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 570 VIGQSAAVESVSNALRRF--RAG-LQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~--~~g-l~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDL-----vSKW 206 (439)
T KOG0739 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKW 206 (439)
T ss_pred HCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEEHHHH-----HHHH
T ss_conf 01405689998754350002535415887754257886799975779999987414---770687301788-----9987
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHC-----------CHHHH-HHHHHHHHCCEEECCCCCEEECCCCEE
Q ss_conf 047711203566774211322156410220214414-----------98999-999998404578879997783033155
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKA-----------HSDVH-NILLQVLDDGRLTDSQGRTVDFRNTLI 714 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKa-----------h~~v~-~~llqild~G~ltd~~G~~v~f~n~ii 714 (853)
T Consensus 207 mGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--GVG~d~~g-------vLV 272 (439)
T KOG0739 207 MGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--GVGNDNDG-------VLV 272 (439)
T ss_pred HCCHHHHH-----HHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCC-------EEE
T ss_conf 32179999-----99999987349947986344443268877711777777778887640--66658886-------489
Q ss_pred EECCCH
Q ss_conf 954851
Q gi|254780877|r 715 IMTSNL 720 (853)
Q Consensus 715 i~TsN~ 720 (853)
T Consensus 273 LgATNi 278 (439)
T KOG0739 273 LGATNI 278 (439)
T ss_pred EECCCC
T ss_conf 723788