HHsearch alignment for GI: 254780877 and conserved domain: KOG3347
>KOG3347 consensus.
Probab=96.26 E-value=0.0062 Score=42.82 Aligned_cols=137 Identities=20% Similarity=0.411 Sum_probs=74.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn~---------l~~gyDE~-----------y~c~i~DE- 62 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKENN---------LYEGYDEE-----------YKCHILDE- 62 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHHH-----CCCEEEHHHHHHHHC---------CHHCCCCC-----------CCCCCCCH-
T ss_conf 87986799988025999999973-----985674556776611---------02102322-----------36754567-
Q ss_pred HHCCHHHHHHHHH-HHHCCEEECCCCCEE---ECCCCEEEECCC---HHHHHHHCCH--H--------HHHHHHHHHHHH
Q ss_conf 4149899999999-840457887999778---303315595485---1268764032--6--------799999999986
Q gi|254780877|r 680 EKAHSDVHNILLQ-VLDDGRLTDSQGRTV---DFRNTLIIMTSN---LGAEYLIEDG--D--------SVHDKVMGIVRS 742 (853)
Q Consensus 680 EKah~~v~~~llq-ild~G~ltd~~G~~v---~f~n~iii~TsN---~G~~~~~~~~--~--------~~~~~~~~~l~~ 742 (853)
T Consensus 63 ----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~e 138 (176)
T KOG3347 63 ----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARE 138 (176)
T ss_pred ----HHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
T ss_conf ----8999888898756884886005676501135579999468459999999758888887651015899999999998
Q ss_pred HCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 288577266681586288998999999999
Q gi|254780877|r 743 AFKPEFLNRLDEIILFEKLRKEDMAKIVRI 772 (853)
Q Consensus 743 ~f~peflnRid~iv~F~~l~~~~~~~i~~~ 772 (853)
T Consensus 139 Sy~~~------iV~eL~s~~~Eem~~ni~r 162 (176)
T KOG3347 139 SYSPK------IVVELQSETKEEMESNISR 162 (176)
T ss_pred HCCCC------CEEECCCCCHHHHHHHHHH
T ss_conf 71874------2133476778999998999