HHsearch alignment for GI: 254780877 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=98.99 E-value=7.3e-08 Score=82.88 Aligned_cols=187 Identities=25% Similarity=0.343 Sum_probs=114.3
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHH---CCCCC---CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH
Q ss_conf 87298533333578999999963---36777---8668952887407779999999873489984445743788731354
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQVL---SRRTK---NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL 245 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~iL---~r~~k---~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l 245 (853)
T Consensus 19 lRP~~l~efiGQ~~i~~~-L~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~--------~~~--tsGP~l 87 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--------IRI--TSGPAL 87 (328)
T ss_pred CCCCCHHHCCCHHHHHHH-HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC--------CEE--CCCCCC
T ss_conf 598857663595999999-999999999649998805765889988999999999986888--------156--245001
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------
Q ss_conf 217454202454589999998607997699963627730266655433588887653124--------------------
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------------- 305 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------------- 305 (853)
T Consensus 88 e----k~~----DL~~iLt~l---~~~dvLFIDEIHRl~--------~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L 148 (328)
T PRK00080 88 E----KAG----DLAALLTNL---EEGDVLFIDEIHRLS--------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred C----CHH----HHHHHHHHC---CCCCEEEEHHHHHCC--------HHHHHHHHHHHHHCEEEEEECCCCCCEEEECCC
T ss_conf 6----747----899999608---878767650653248--------889988579877523457864786532455589
Q ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHCCCEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66048997448999997300111320231111-15777678999999978986541496101589999986333202457
Q gi|254780877|r 306 GELHCIGATTLDEYRKYIEKDPALARRFQSLL-VGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDR 384 (853)
Q Consensus 306 G~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~-V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r 384 (853)
T Consensus 149 ~pFTLIGATTr~g~-----Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l----~i~i~~~~~~eIA~rS------R 213 (328)
T PRK00080 149 PPFTLIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GIEIDEEGALEIARRS------R 213 (328)
T ss_pred CCEEEEECCCCCCC-----CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHC------C
T ss_conf 98347401367665-----7767897579336634589999999999999983----9887899999999863------8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6747789999999998754
Q gi|254780877|r 385 FLPDKAIDLMDEASARVRM 403 (853)
Q Consensus 385 ~lPDKAIDllDeA~A~~~i 403 (853)
T Consensus 214 GTPRiAnrLLrRvrDfa~v 232 (328)
T PRK00080 214 GTPRIANRLLRRVRDFAQV 232 (328)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9839999999999999998