HHsearch alignment for GI: 254780877 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.32 E-value=1.5e-11 Score=112.74 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=138.5
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC
Q ss_conf 69987298533333578999999963367778668952887407779999999873489984445743788731354217
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG 248 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 248 (853)
T Consensus 7 ~eKYRP~~l~di~g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~-----~~~~lelnasd---- 77 (318)
T PRK00440 7 VEKYRPRSLDEVVGQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYW-----RENFLELNASD---- 77 (318)
T ss_pred HHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-----CCCEEEECCCC----
T ss_conf 460198989994196999999999998799866988895998899999999999769864-----34768951645----
Q ss_pred CCCCC--HHHHHHHHHHHHHHHCC-CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEEECHHHHHHHH
Q ss_conf 45420--24545899999986079-97699963627730266655433588887653124--660489974489999973
Q gi|254780877|r 249 AKFRG--EFEERLKSLLCEIRSED-GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GELHCIGATTLDEYRKYI 323 (853)
Q Consensus 249 ~~~rg--~~e~r~~~i~~~~~~~~-~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l~~IgaTT~~Eyrk~i 323 (853)
T Consensus 78 --~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~--------~~aq~aL~~~mE~~~~~~~fil~~n--~~~kii 145 (318)
T PRK00440 78 --ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------SDAQQALRRTMEMYSQTTRFILSCN--YSSKII 145 (318)
T ss_pred --CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHHCCCCCCEEEEECC--CCCCCC
T ss_conf --6671789999999997267789973899986855322--------5567888764310566625886348--833376
Q ss_pred HCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 0011132023111115777678999999978986541496101589999986333202457674778999999999
Q gi|254780877|r 324 EKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 324 EkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
T Consensus 146 ---~~i~SRc~~i~f~~~~~~~i~~~L~~I~~~----E~i~~~~~~l~~i~~~s~gd------lR~ain~Lq~~~~ 208 (318)
T PRK00440 146 ---DPIQSRCAVFRFSPLPKEAVIERLRYIAKN----EGLEITDDALEAIYYVSEGD------MRKAINALQAAAA 208 (318)
T ss_pred ---CCHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_conf ---155655101115789999999999999998----59998999999999864998------9999999999997