HHsearch alignment for GI: 254780877 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.39 E-value=5.3e-12 Score=116.50 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=124.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf 767459489999999999874--------101236566512898726786168899999998723776530022447740
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM 638 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~ 638 (853)
T Consensus 131 ~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pP---k-GvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~s~l~ 203 (390)
T PRK03992 131 YEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPP---K-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV 203 (390)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC---C-EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHH
T ss_conf 466149899999999999998659899997699999---7-27868989997899999999874---8887996679975
Q ss_pred CCCCCCHHHCCCCHHCCCCCC--CCCCHHHH-CCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHC--CEEECC
Q ss_conf 345320130477112035667--74211322-15641022021441-----------498999999998404--578879
Q gi|254780877|r 639 EKHSVSRLIGSPPGYVGYEEG--GALTEAVR-RHPYQVVLFDEIEK-----------AHSDVHNILLQVLDD--GRLTDS 702 (853)
Q Consensus 639 e~~~vs~LiGappGYvG~~~g--g~Lte~vr-~~P~sVil~DEiEK-----------ah~~v~~~llqild~--G~ltd~ 702 (853)
T Consensus 204 s-----k-------~vGesek~vr~lF~~Ar~~aP-~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~--~~ 268 (390)
T PRK03992 204 Q-----K-------FIGEGARLVRELFELAREKAP-SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF--DP 268 (390)
T ss_pred H-----C-------CCCHHHHHHHHHHHHHHHHCC-CEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CC
T ss_conf 2-----4-------541799999999999997099-0897143256633567788862088999999999974487--77
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99778303315595485126876403267999999999862885772--6668158628899899999999999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSL 780 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~ 780 (853)
T Consensus 269 ------~~~V~VIaATNr--------pd~------------LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~---- 318 (390)
T PRK03992 269 ------RGNVKIIAATNR--------PDI------------LDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRK---- 318 (390)
T ss_pred ------CCCEEEEEECCC--------CHH------------CCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC----
T ss_conf ------788279960698--------100------------59777547765238870894999999999998479----
Q ss_pred HHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98579899998899999997089822062157999998733499
Q gi|254780877|r 781 IKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPL 824 (853)
Q Consensus 781 l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~l 824 (853)
T Consensus 319 -----~~l~-~dvdl~~lA~~--T~G~SGADI~~lc~EA~m~Ai 354 (390)
T PRK03992 319 -----MNLA-DDVDLEELAEL--TEGASGADLKAICTEAGMFAI 354 (390)
T ss_pred -----CCCC-CCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
T ss_conf -----9999-88899999976--879989999999999999999