HHsearch alignment for GI: 254780877 and conserved domain: PRK03992

>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.39  E-value=5.3e-12  Score=116.50  Aligned_cols=198  Identities=26%  Similarity=0.413  Sum_probs=124.2

Q ss_pred             HHHHCCHHHHHHHHHHHHHHH--------HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf             767459489999999999874--------101236566512898726786168899999998723776530022447740
Q gi|254780877|r  567 SKSVIGQSAAVESVSNALRRF--------RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM  638 (853)
Q Consensus       567 ~~~v~gq~~ai~~v~~~~~~~--------~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~  638 (853)
T Consensus       131 ~~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pP---k-GvLLyGPPGtGKTllAkAvA~e~---~~~fi~v~~s~l~  203 (390)
T PRK03992        131 YEDIGGLDEQIREVREAVELPLKNPELFEEVGIEPP---K-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV  203 (390)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC---C-EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHH
T ss_conf             466149899999999999998659899997699999---7-27868989997899999999874---8887996679975


Q ss_pred             CCCCCCHHHCCCCHHCCCCCC--CCCCHHHH-CCCCCEEEEHHHHH-----------CCHHHHHHHHHHHHC--CEEECC
Q ss_conf             345320130477112035667--74211322-15641022021441-----------498999999998404--578879
Q gi|254780877|r  639 EKHSVSRLIGSPPGYVGYEEG--GALTEAVR-RHPYQVVLFDEIEK-----------AHSDVHNILLQVLDD--GRLTDS  702 (853)
Q Consensus       639 e~~~vs~LiGappGYvG~~~g--g~Lte~vr-~~P~sVil~DEiEK-----------ah~~v~~~llqild~--G~ltd~  702 (853)
T Consensus       204 s-----k-------~vGesek~vr~lF~~Ar~~aP-~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~--~~  268 (390)
T PRK03992        204 Q-----K-------FIGEGARLVRELFELAREKAP-SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF--DP  268 (390)
T ss_pred             H-----C-------CCCHHHHHHHHHHHHHHHHCC-CEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CC
T ss_conf             2-----4-------541799999999999997099-0897143256633567788862088999999999974487--77


Q ss_pred             CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99778303315595485126876403267999999999862885772--6668158628899899999999999999999
Q gi|254780877|r  703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSL  780 (853)
Q Consensus       703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~  780 (853)
T Consensus       269 ------~~~V~VIaATNr--------pd~------------LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~~----  318 (390)
T PRK03992        269 ------RGNVKIIAATNR--------PDI------------LDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTRK----  318 (390)
T ss_pred             ------CCCEEEEEECCC--------CHH------------CCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC----
T ss_conf             ------788279960698--------100------------59777547765238870894999999999998479----


Q ss_pred             HHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             98579899998899999997089822062157999998733499
Q gi|254780877|r  781 IKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPL  824 (853)
Q Consensus       781 l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~l  824 (853)
T Consensus       319 -----~~l~-~dvdl~~lA~~--T~G~SGADI~~lc~EA~m~Ai  354 (390)
T PRK03992        319 -----MNLA-DDVDLEELAEL--TEGASGADLKAICTEAGMFAI  354 (390)
T ss_pred             -----CCCC-CCCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
T ss_conf             -----9999-88899999976--879989999999999999999