HHsearch alignment for GI: 254780877 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=98.09 E-value=6.7e-05 Score=58.78 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC--------C
Q ss_conf 333357899999996336--777866895288740777999999987348998444574378873135421--------7
Q gi|254780877|r 179 PVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA--------G 248 (853)
Q Consensus 179 PVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g 248 (853)
T Consensus 187 elIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtGTGKelvAr~IH~~S-------~R~~~Pfv~vNCaalpe~l~EseLFG 259 (510)
T PRK05022 187 EMIGQSPAMQQLKKEIEVVAASDLNVLITGETGVGKELVARAIHQAS-------PRAVKPLVYLNCAALPESLAESELFG 259 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 75208999999999999996899988988989813999999999668-------87899857888999985678998659
Q ss_pred CCCCCHHHHHH---HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC-------------EEEEE
Q ss_conf 45420245458---999999860799769996362773026665543358888765312466-------------04899
Q gi|254780877|r 249 AKFRGEFEERL---KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE-------------LHCIG 312 (853)
Q Consensus 249 ~~~rg~~e~r~---~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~-------------l~~Ig 312 (853)
T Consensus 260 -h~kGaFtGA~~~r~G~f---e~A~gG-TLfLDEI~~L--------pl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIA 326 (510)
T PRK05022 260 -HVKGAFTGAISNRSGKF---ELADGG-TLFLDEIGEL--------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 326 (510)
T ss_pred -CCCCCCCCCCCCCCCCE---EECCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEE
T ss_conf -77788688655678810---177898-7987574549--------9999999999984795885589946666689996
Q ss_pred EECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 74489999973001---113202311111577767899999997898654149610158999998633320-24576747
Q gi|254780877|r 313 ATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRY-ITDRFLPD 388 (853)
Q Consensus 313 aTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rY-i~~r~lPD 388 (853)
T Consensus 327 ATnrd-L~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~F---------------Le~~~~~~g~~~~~ls~ 390 (510)
T PRK05022 327 ATNRD-LREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYF---------------LEQNRLRLGLSSLRLSP 390 (510)
T ss_pred ECCCC-HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCCCH
T ss_conf 07835-999988396389999876204034808655554099999999---------------99999982989898889
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 7899999999987541022214578879999974
Q gi|254780877|r 389 KAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 389 KAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
T Consensus 391 eAl~~L---------~~Y~WPGNVRELenvIeRA 415 (510)
T PRK05022 391 DAQAAL---------LQYDWPGNVRELEHVISRA 415 (510)
T ss_pred HHHHHH---------HCCCCCCHHHHHHHHHHHH
T ss_conf 999999---------7099997899999999999