HHsearch alignment for GI: 254780877 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=99.86 E-value=7.7e-20 Score=180.23 Aligned_cols=151 Identities=23% Similarity=0.410 Sum_probs=114.1
Q ss_pred CCEEEEHHHHHCC------------HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 4102202144149------------8999999998404578879997783033155954851268764032679999999
Q gi|254780877|r 671 YQVVLFDEIEKAH------------SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMG 738 (853)
Q Consensus 671 ~sVil~DEiEKah------------~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~ 738 (853)
T Consensus 249 ~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G-~V~TdhILFIas---GAFh~sKPSD-------- 316 (442)
T PRK05201 249 NGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYG-MVKTDHILFIAS---GAFHVAKPSD-------- 316 (442)
T ss_pred CCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEECC---CCCCCCCCCH--------
T ss_conf 1704511465653035788989773307888788753885556777-602550345504---5001478202--------
Q ss_pred HHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC-----CCCCC
Q ss_conf 99862885772666815862889989999999----9999999999985798999988999999970898-----22062
Q gi|254780877|r 739 IVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYD-----PSYGA 809 (853)
Q Consensus 739 ~l~~~f~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~Ga 809 (853)
T Consensus 317 -----LIPEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGA 391 (442)
T PRK05201 317 -----LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGA 391 (442)
T ss_pred -----HHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf -----249871755058882449999999996786157899999998624967998479999999999985144766773
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 157999998733499999970868897889999
Q gi|254780877|r 810 RPLKRVIQRYIQNPLAERVLSQTISDGDSIEVF 842 (853)
Q Consensus 810 R~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~ 842 (853)
T Consensus 392 R~L~tI~E~vl~d~~Fe~----p~~~~~~v~I~ 420 (442)
T PRK05201 392 RRLHTVMEKLLEDISFEA----PDRSGEKITID 420 (442)
T ss_pred HHHHHHHHHHHHHHCCCC----CCCCCCEEEEC
T ss_conf 788999999989861468----89999779988