HHsearch alignment for GI: 254780877 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=99.92 E-value=3.9e-23 Score=207.03 Aligned_cols=251 Identities=27% Similarity=0.482 Sum_probs=180.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHH----HHHHCCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 235547767459489999999999----87410123656---65128987267861688999999987237765300224
Q gi|254780877|r 561 RIETEISKSVIGQSAAVESVSNAL----RRFRAGLQDPQ---RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 561 ~l~~~l~~~v~gq~~ai~~v~~~~----~~~~~gl~~~~---~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
T Consensus 65 eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaD 141 (411)
T PRK05342 65 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIAD 141 (411)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
T ss_conf 999986214028488889999999999999860213356652134538998999977889999999986---99989986
Q ss_pred HHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHH-------HHCCCCCEEEEHHHHHCC--------------HHHHHHHHH
Q ss_conf 47740345320130477112035667742113-------221564102202144149--------------899999999
Q gi|254780877|r 634 MSEYMEKHSVSRLIGSPPGYVGYEEGGALTEA-------VRRHPYQVVLFDEIEKAH--------------SDVHNILLQ 692 (853)
Q Consensus 634 Msey~e~~~vs~LiGappGYvG~~~gg~Lte~-------vr~~P~sVil~DEiEKah--------------~~v~~~llq 692 (853)
T Consensus 142 AT~lTE-----------aGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLk 210 (411)
T PRK05342 142 ATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 210 (411)
T ss_pred ECEECC-----------CCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 120012-----------674560799999999998288899883682888502345424788888777651248999999
Q ss_pred HHHCCEEEC---CCCC--------EEECCCCEEEECCCH-HHHHHHCC----------------HHHHHHHH------HH
Q ss_conf 840457887---9997--------783033155954851-26876403----------------26799999------99
Q gi|254780877|r 693 VLDDGRLTD---SQGR--------TVDFRNTLIIMTSNL-GAEYLIED----------------GDSVHDKV------MG 738 (853)
Q Consensus 693 ild~G~ltd---~~G~--------~v~f~n~iii~TsN~-G~~~~~~~----------------~~~~~~~~------~~ 738 (853)
T Consensus 211 ii-EGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~D 289 (411)
T PRK05342 211 IL-EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPED 289 (411)
T ss_pred HH-CCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
T ss_conf 87-58714118887777877651676147179991155335899998635788767788766411000567876279878
Q ss_pred HHHHHCCHHHHCCCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99862885772666815862889989999999----99999999999857989999889999999708982206215799
Q gi|254780877|r 739 IVRSAFKPEFLNRLDEIILFEKLRKEDMAKIV----RIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKR 814 (853)
Q Consensus 739 ~l~~~f~peflnRid~iv~F~~l~~~~~~~i~----~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r 814 (853)
T Consensus 290 Li~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRs 369 (411)
T PRK05342 290 LVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRS 369 (411)
T ss_pred HHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88738837761466405462447999999996587415999999999754967998689999999999984757457799
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999873349999
Q gi|254780877|r 815 VIQRYIQNPLAE 826 (853)
Q Consensus 815 ~i~~~i~~~la~ 826 (853)
T Consensus 370 IlE~iLld~MFe 381 (411)
T PRK05342 370 ILEEVLLDVMFE 381 (411)
T ss_pred HHHHHHHHHHCC
T ss_conf 999997887544