HHsearch alignment for GI: 254780877 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=98.61 E-value=2e-06 Score=71.26 Aligned_cols=87 Identities=30% Similarity=0.432 Sum_probs=57.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHH----HCCCC
Q ss_conf 778668952887407779999999873489984445743788731354217454202-4545899999986----07997
Q gi|254780877|r 198 TKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGE-FEERLKSLLCEIR----SEDGE 272 (853)
Q Consensus 198 ~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-~e~r~~~i~~~~~----~~~~~ 272 (853)
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDA-------T~l-TEaGYVGeDVE~ii~~Llq~Ad~dve~Ae-~ 175 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADA-------TTL-TEAGYVGEDVENILLKLLQAADYDVEKAQ-R 175 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEE-------CEE-CCCCCCCCCHHHHHHHHHHHCCCCHHHHH-C
T ss_conf 34538998999977889999999986---999899861-------200-12674560799999999998288899883-6
Q ss_pred EEEEECCHHHHCCCCC-CCCCCCHH
Q ss_conf 6999636277302666-55433588
Q gi|254780877|r 273 IILFIDELHVLVGAGK-TDGAMDAS 296 (853)
Q Consensus 273 ~ilfide~h~~~gaG~-~~g~~Daa 296 (853)
T Consensus 176 GIV~IDEIDKIarks~~~s~trDVS 200 (411)
T PRK05342 176 GIVYIDEIDKIARKSENPSITRDVS 200 (411)
T ss_pred CEEEEEEHHHHHHCCCCCCCCCCCC
T ss_conf 8288850234542478888877765