HHsearch alignment for GI: 254780877 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=98.94 E-value=2.5e-08 Score=86.67 Aligned_cols=200 Identities=23% Similarity=0.261 Sum_probs=131.2
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH-CC-C----------
Q ss_conf 699872985333335789999999633677-7866895288740777999999987348998444-57-4----------
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLSRRT-KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESL-KG-K---------- 235 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~r~~-k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l-~~-~---------- 235 (853)
T Consensus 7 ark~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~ 86 (705)
T PRK05648 7 ARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGR 86 (705)
T ss_pred HHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 55317875766328199999999999709863046500789888989999999986778999889787760046662489
Q ss_pred --EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CCE
Q ss_conf --37887313542174542024545899999986079--9-7699963627730266655433588887653124--660
Q gi|254780877|r 236 --RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GEL 308 (853)
Q Consensus 236 --~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~l 308 (853)
T Consensus 87 ~~d~~e~d~------as~~~v--~~~r~~~~~~~~~p~~~~~kv~~idevhmls--------~~~fnallktleepp~~v 150 (705)
T PRK05648 87 FVDLIEVDA------ASRTKV--EDTRELLDNVQYAPTRGRYKVYLIDEVHMLS--------SHSFNALLKTLEEPPPHV 150 (705)
T ss_pred CCCEEEECC------CCCCCH--HHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC--------HHHHHHHHHHCCCCCCCE
T ss_conf 776344515------544788--9999999855517767745799984265417--------999999987404797545
Q ss_pred EEEEEECHHHHHHHHHCCH--HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 4899744899999730011--13202311111577767899999997898654149610158999998633320245767
Q gi|254780877|r 309 HCIGATTLDEYRKYIEKDP--ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFL 386 (853)
Q Consensus 309 ~~IgaTT~~Eyrk~iEkD~--Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~l 386 (853)
T Consensus 151 ~f~~att~~------~k~p~t~~sr-c~~~~~~~~~~~~~~~~l~~~~~----~e~~~~~~~~~~~~~~~~~g~~rd--- 216 (705)
T PRK05648 151 KFLLATTDP------QKLPVTILSR-CLQFSLKNMSPERVVEHLSHVLG----AENVPFEEDALWLLGRAADGSMRD--- 216 (705)
T ss_pred EEEEECCCH------HHCCHHHHHH-HHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---
T ss_conf 999842873------5375899976-64302368999999999999999----759977899999999974896777---
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 477899999999987
Q gi|254780877|r 387 PDKAIDLMDEASARV 401 (853)
Q Consensus 387 PDKAIDllDeA~A~~ 401 (853)
T Consensus 217 ---~ls~~dq~~~~~ 228 (705)
T PRK05648 217 ---AMSLTDQAIAFG 228 (705)
T ss_pred ---HHHHHHHHHHCC
T ss_conf ---999999998606