HHsearch alignment for GI: 254780877 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.66  E-value=0.002  Score=46.80  Aligned_cols=90  Identities=26%  Similarity=0.437  Sum_probs=53.7

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHH-H-H-CCC-CCCCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH
Q ss_conf             66512898726786168899999998-7-2-377-6530022447---74034532013047711203566774211322
Q gi|254780877|r  595 QRPMGSFMFLGPTGVGKTELVKSLAR-L-L-FDD-ENSMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR  667 (853)
Q Consensus       595 ~~p~~~flf~GptGvGKTelak~la~-~-l-f~~-~~~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr  667 (853)
T Consensus       207 ~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp-~~v~~~~-~~l~~al~  284 (412)
T PRK05703        207 LEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIP-VKVAYDP-KELAKALE  284 (412)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE-EEEECCH-HHHHHHHH
T ss_conf             456736999888887567699999999999729981799983767777999999999971973-7984799-99999998


Q ss_pred             CC-CCCEEEEHHHHHCCHHH
Q ss_conf             15-64102202144149899
Q gi|254780877|r  668 RH-PYQVVLFDEIEKAHSDV  686 (853)
Q Consensus       668 ~~-P~sVil~DEiEKah~~v  686 (853)
T Consensus       285 ~~~~~dlILIDTaG~s~~d~  304 (412)
T PRK05703        285 QLANCDLILIDTAGRSQRDP  304 (412)
T ss_pred             HHCCCCEEEEECCCCCCCCH
T ss_conf             71589979996898897899