HHsearch alignment for GI: 254780877 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.66 E-value=0.002 Score=46.80 Aligned_cols=90 Identities=26% Similarity=0.437 Sum_probs=53.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH-H-H-CCC-CCCCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH
Q ss_conf 66512898726786168899999998-7-2-377-6530022447---74034532013047711203566774211322
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLAR-L-L-FDD-ENSMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR 667 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~-~-l-f~~-~~~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr 667 (853)
T Consensus 207 ~~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp-~~v~~~~-~~l~~al~ 284 (412)
T PRK05703 207 LEQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIP-VKVAYDP-KELAKALE 284 (412)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE-EEEECCH-HHHHHHHH
T ss_conf 456736999888887567699999999999729981799983767777999999999971973-7984799-99999998
Q ss_pred CC-CCCEEEEHHHHHCCHHH
Q ss_conf 15-64102202144149899
Q gi|254780877|r 668 RH-PYQVVLFDEIEKAHSDV 686 (853)
Q Consensus 668 ~~-P~sVil~DEiEKah~~v 686 (853)
T Consensus 285 ~~~~~dlILIDTaG~s~~d~ 304 (412)
T PRK05703 285 QLANCDLILIDTAGRSQRDP 304 (412)
T ss_pred HHCCCCEEEEECCCCCCCCH
T ss_conf 71589979996898897899