HHsearch alignment for GI: 254780877 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=98.11 E-value=2e-05 Score=62.96 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=94.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHH-----------------HCCCEEEEEEH-HHHHCCCCCCCHHHHHHHHH
Q ss_conf 6689528874077799999998734899844-----------------45743788731-35421745420245458999
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPES-----------------LKGKRLMALDM-GALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~-----------------l~~~~i~~ld~-~~l~ag~~~rg~~e~r~~~i 262 (853)
T Consensus 24 A~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I-----~---IdqIR~l 94 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAFLLCEA-PQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPI-----K---VDQVREL 94 (328)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCC-----C---HHHHHHH
T ss_conf 464479998679999999999984899-999899988889999875899987998426667769-----7---9999999
Q ss_pred HHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECC
Q ss_conf 9998607---9976999636277302666554335888876531246604899744899999730011132023111115
Q gi|254780877|r 263 LCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVG 339 (853)
Q Consensus 263 ~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~ 339 (853)
T Consensus 95 ~~~~~~~~~~g~~KV~iI~~Ae~m--------~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lL---pTI~SRCq~~~~~ 163 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAM--------NRNAANALLKSLEEPSGQTVLLLISHQPSRLL---PTIKSRCQQLACP 163 (328)
T ss_pred HHHHHHCCCCCCCEEEEEEHHHHH--------CHHHHHHHHHHHHCCCCCEEEEEEECCHHHCH---HHHHHCCEEEECC
T ss_conf 999831766789579995028773--------89999999998507898759998609934482---5887414133489
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 777678999999978986541496101589999986333202457674778999999
Q gi|254780877|r 340 EPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDE 396 (853)
Q Consensus 340 Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDe 396 (853)
T Consensus 164 ~p~~e~~~~~L~~~~~--------~~~~~~a~~ll~la~G------~p~~A~~l~~~ 206 (328)
T PRK05707 164 LPSNEPSLQWLQQALP--------ESDAEERIELLTLAAG------SPLRALQLHAQ 206 (328)
T ss_pred CCCHHHHHHHHHHHCC--------CCCHHHHHHHHHHCCC------CHHHHHHHHCC
T ss_conf 9899999999997556--------5578999999997499------99999987486