HHsearch alignment for GI: 254780877 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=97.50 E-value=0.0089 Score=41.54 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=68.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-CCCCCCCHH--HCCCCHHC--CCCCCC--CCCHHHHC---
Q ss_conf 289872678616889999999872377653002244774-034532013--04771120--356677--42113221---
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY-MEKHSVSRL--IGSPPGYV--GYEEGG--ALTEAVRR--- 668 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey-~e~~~vs~L--iGappGYv--G~~~gg--~Lte~vr~--- 668 (853)
T Consensus 26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~~------~~~Cg~C~sC-~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~ 98 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSHALLCQNYQ------SEACGFCHSC-ELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNR 98 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCCHHH-HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 067667999857999999999998089999------9988778779-998758999823661233567687999999999
Q ss_pred --------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf --------56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 669 --------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 669 --------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
T Consensus 99 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~t~fiL~t~~~ 148 (319)
T PRK06090 99 LAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPA-----------PNCLFLLVTHNQ 148 (319)
T ss_pred HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCEEEEEEECCH
T ss_conf 97545210693699981444349999999999842899-----------883899876851