HHsearch alignment for GI: 254780877 and conserved domain: PRK06090

>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=97.50  E-value=0.0089  Score=41.54  Aligned_cols=105  Identities=23%  Similarity=0.378  Sum_probs=68.9

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-CCCCCCCHH--HCCCCHHC--CCCCCC--CCCHHHHC---
Q ss_conf             289872678616889999999872377653002244774-034532013--04771120--356677--42113221---
Q gi|254780877|r  599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY-MEKHSVSRL--IGSPPGYV--GYEEGG--ALTEAVRR---  668 (853)
Q Consensus       599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey-~e~~~vs~L--iGappGYv--G~~~gg--~Lte~vr~---  668 (853)
T Consensus        26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~~------~~~Cg~C~sC-~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~   98 (319)
T PRK06090         26 GALLLQSDEGLGVESLVELFSHALLCQNYQ------SEACGFCHSC-ELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNR   98 (319)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCCHHH-HHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf             067667999857999999999998089999------9988778779-998758999823661233567687999999999


Q ss_pred             --------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf             --------56410220214414989999999984045788799977830331559548512
Q gi|254780877|r  669 --------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG  721 (853)
Q Consensus       669 --------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G  721 (853)
T Consensus        99 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~t~fiL~t~~~  148 (319)
T PRK06090         99 LAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPA-----------PNCLFLLVTHNQ  148 (319)
T ss_pred             HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCEEEEEEECCH
T ss_conf             97545210693699981444349999999999842899-----------883899876851