HHsearch alignment for GI: 254780877 and conserved domain: PRK06526

>PRK06526 transposase; Provisional.
Probab=98.07  E-value=1.2e-05  Score=64.86  Aligned_cols=103  Identities=20%  Similarity=0.349  Sum_probs=69.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH-CCCCCEEEEHH
Q ss_conf             89872678616889999999872377653002244774034532013047711203566774211322-15641022021
Q gi|254780877|r  600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR-RHPYQVVLFDE  678 (853)
Q Consensus       600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr-~~P~sVil~DE  678 (853)
T Consensus       100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g------------~~~~~~~~l~~~dLLIiDe  167 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAG------------RLQDELVKLGRIPLLIVDE  167 (254)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCC------------CHHHHHHHHHCCCEEEEEC
T ss_conf             7899899998689999999999998699679987799999999988558------------0999999851368776502


Q ss_pred             HHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf             4414--9899999999840457887999778303315595485126876
Q gi|254780877|r  679 IEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL  725 (853)
Q Consensus       679 iEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~  725 (853)
T Consensus       168 ~g~~~~~~~~a~~lf~li~~Ry-----e~------~S~IiTSn~~~~~W  205 (254)
T PRK06526        168 VGYIPFEAEAANLFFQLVSSRY-----ER------ASLIVTSNKPFGRW  205 (254)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHHH
T ss_conf             1364478899999999999997-----45------88676658986688