HHsearch alignment for GI: 254780877 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=98.07 E-value=1.2e-05 Score=64.86 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=69.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHH-CCCCCEEEEHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322-15641022021
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVR-RHPYQVVLFDE 678 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr-~~P~sVil~DE 678 (853)
T Consensus 100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~g------------~~~~~~~~l~~~dLLIiDe 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAG------------RLQDELVKLGRIPLLIVDE 167 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCC------------CHHHHHHHHHCCCEEEEEC
T ss_conf 7899899998689999999999998699679987799999999988558------------0999999851368776502
Q ss_pred HHHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 4414--9899999999840457887999778303315595485126876
Q gi|254780877|r 679 IEKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 679 iEKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
T Consensus 168 ~g~~~~~~~~a~~lf~li~~Ry-----e~------~S~IiTSn~~~~~W 205 (254)
T PRK06526 168 VGYIPFEAEAANLFFQLVSSRY-----ER------ASLIVTSNKPFGRW 205 (254)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHHH
T ss_conf 1364478899999999999997-----45------88676658986688