HHsearch alignment for GI: 254780877 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.32 E-value=9.9e-11 Score=106.18 Aligned_cols=203 Identities=20% Similarity=0.199 Sum_probs=144.4
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH------------HHCC
Q ss_conf 56998729853333357899999996336777866-8952887407779999999873489984------------4457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE------------SLKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~------------~l~~ 234 (853)
T Consensus 6 la~KYRP~~F~dvvGQe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g 85 (560)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDND 85 (560)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 77642898654403949999999999974997743663289987899999999999659999998888788788887459
Q ss_pred --CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf --437887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 235 --KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 --~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
T Consensus 86 ~~~DviEidaa------sn~~V--ddIR~l~e~v~~~P~~~~yKV~IIDEahmL--------t~~A~NALLKtLEEPP~~ 149 (560)
T PRK06647 86 SSLDVIEIDGA------SNTSV--QDVRQIKEEIMFPPASSRYRVYIIDEVHML--------SNSAFNALLKTIEEPPPY 149 (560)
T ss_pred CCCCEEEECCC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEECCHHHC--------CHHHHHHHHHHHHCCCCC
T ss_conf 99875764364------54888--999999998632876687069996465655--------999999999986348875
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
T Consensus 150 ~~FILaTte~--~KI~---~TI~SRCQ~f~Fk~i~~~~I~~~L~~I~~~----E~i~~e~~AL~lIa~~a~Gs~RD---- 216 (560)
T PRK06647 150 IVFIFATTEV--HKLP---ATIKSRCQHFNFRLLSLEKIYEMLKKVCLE----DDIKYEDEALKWIAYKSGGSVRD---- 216 (560)
T ss_pred EEEEEECCCH--HHCH---HHHHHHHEEEECCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 5999977994--7684---899965104105559999999999999986----79887999999999977895888----
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77899999999987
Q gi|254780877|r 388 DKAIDLMDEASARV 401 (853)
Q Consensus 388 DKAIDllDeA~A~~ 401 (853)
T Consensus 217 --alslldq~i~~~ 228 (560)
T PRK06647 217 --AYTLFDQIVSFS 228 (560)
T ss_pred --HHHHHHHHHHCC
T ss_conf --999999999607