HHsearch alignment for GI: 254780877 and conserved domain: PRK08727

Probab=98.36  E-value=8.3e-05  Score=58.04  Aligned_cols=188  Identities=16%  Similarity=0.190  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHH
Q ss_conf             33357899999996336777866895288740777999999987348998444574378873135421745420245458
Q gi|254780877|r  180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERL  259 (853)
Q Consensus       180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~  259 (853)
T Consensus        22 i~~~n~~~a~l~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~-------~~~~~~yl~l~~~----------~~~~   84 (233)
T PRK08727         22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQ-------AGRSSAYLPLQAA----------AGRL   84 (233)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHH----------HHHH
T ss_conf             6785599999998743888898999899999889999999999982-------7997288447885----------3202


Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCC---CEE
Q ss_conf             99999986079976999636277302666554335888876531246604899744899999730011132023---111
Q gi|254780877|r  260 KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRF---QSL  336 (853)
Q Consensus       260 ~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRF---q~i  336 (853)
T Consensus        85 ~~~l~~le~~---~ll~iDDid~i~g~~~~e~a--LFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~D--L~SRL~~~~~~  157 (233)
T PRK08727         85 RDALEALEGR---SLVALDGVDSIAGQREDEVA--LFDFHNRARAAGITLLYTARQMPDGLALVLPD--LRSRLSQCIRI  157 (233)
T ss_pred             HHHHHHHCCC---CEEEEECCHHCCCCHHHHHH--HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHH--HHHHHHCCCEE
T ss_conf             5677531038---97898550112698279999--99999999861983899779895662310021--99999669228


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             11577767899999997898654149610158999998633320245767477899999999
Q gi|254780877|r  337 LVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS  398 (853)
Q Consensus       337 ~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~  398 (853)
T Consensus       158 ~l~~~dD~~~~~iL~~~a~----~rgl~l~~~V~~Yll~r~~R~~~~---l~~~l~~LD~~S  212 (233)
T PRK08727        158 GLPVLDDVARAAVLRDRAQ----RRGLALDEAAIDWLLTHGERELAG---LVALLDRLDRES  212 (233)
T ss_pred             EECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH
T ss_conf             8578897999999999999----869999989999999856889999---999999999999