HHsearch alignment for GI: 254780877 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=98.16 E-value=0.0003 Score=53.51 Aligned_cols=199 Identities=16% Similarity=0.194 Sum_probs=122.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCCCC----CHHHCCCEEEEEEHHHHHCCCC--
Q ss_conf 333335789999999633677786-689528874077799999998734899----8444574378873135421745--
Q gi|254780877|r 178 DPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIINGDI----PESLKGKRLMALDMGALIAGAK-- 250 (853)
Q Consensus 178 DPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~~v----p~~l~~~~i~~ld~~~l~ag~~-- 250 (853)
T Consensus 23 ~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpd 102 (352)
T PRK09112 23 NRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPN 102 (352)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 46278699999999999849965246535899808999999999998669986668655678887877899997489999
Q ss_pred --------------CCCHH-HHHHHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC--CEEE
Q ss_conf --------------42024-54589999998607---9976999636277302666554335888876531246--6048
Q gi|254780877|r 251 --------------FRGEF-EERLKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG--ELHC 310 (853)
Q Consensus 251 --------------~rg~~-e~r~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG--~l~~ 310 (853)
T Consensus 103 l~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m--------~~~aaNALLK~LEEPp~~~~f 174 (352)
T PRK09112 103 LLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM--------NRNAANAILKTLEEPPARALF 174 (352)
T ss_pred EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH--------HHHHHHHHHHHHHCCCCCEEE
T ss_conf 565534322021454335777999999998454886688069998187874--------699999999985348987489
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
T Consensus 175 iLit~~~~--~ll---~TI~SRCq~~~f~pL~~~di~~~L~~i~~~----~~~-~~~~~~~~l~~~a~GS------~~~A 238 (352)
T PRK09112 175 ILISHSSG--RLL---PTIRSRCQPISLKPLDDDELKKALSHLGSK----QGI-SAGEETEALLQRSEGS------VRKA 238 (352)
T ss_pred EEEECCHH--HCH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHCCC------HHHH
T ss_conf 98869977--776---899974332148893989999999987512----689-9879999999870899------8899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780877|r 391 IDLMDEASAR 400 (853)
Q Consensus 391 IDllDeA~A~ 400 (853)
T Consensus 239 l~L~~~~gl~ 248 (352)
T PRK09112 239 LLLLNYGGLE 248 (352)
T ss_pred HHHHCCCHHH
T ss_conf 9874487799