HHsearch alignment for GI: 254780877 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=98.78 E-value=5.3e-07 Score=75.83 Aligned_cols=227 Identities=19% Similarity=0.248 Sum_probs=121.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC---CCCC
Q ss_conf 6745948999999999987410123656651289872678616889999999872377653002244774034---5320
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEK---HSVS 644 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~---~~vs 644 (853)
T Consensus 191 ~dv~Gq~~akral----eIAAAGgH-------nlLl~GpPG~GKTMlA~rlp~ILPp-------Lt~~e~lEv~~I~Sva 252 (506)
T PRK09862 191 SDVVGQEQGKRGL----EITAAGGH-------NLLLIGPPGTGKTMLASRINGLLPD-------LSNEEALESAAILSLV 252 (506)
T ss_pred HHHCCCHHHHHHH----HHHHCCCC-------CEEEECCCCCCHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHH
T ss_conf 6536979999999----99744688-------6598769994598999775123899-------8989999999999871
Q ss_pred HHH------CCC-----------CHHCCCCCCCCC--CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCC--
Q ss_conf 130------477-----------112035667742--11322156410220214414989999999984045788799--
Q gi|254780877|r 645 RLI------GSP-----------PGYVGYEEGGAL--TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQ-- 703 (853)
Q Consensus 645 ~Li------Gap-----------pGYvG~~~gg~L--te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~-- 703 (853)
T Consensus 253 g~~~~~~~~~~rPfR~PHHs~S~~aliG---GG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~ 329 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVG---GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTR 329 (506)
T ss_pred CCCCCCCCCCCCCEECCCCCCCHHHHHC---CCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8987777546685037887654766637---9999999722213575788455000688899987762247759999668
Q ss_pred CCEEECCCCEEEECCCH---HHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHH-------------HH
Q ss_conf 97783033155954851---268764032679999999998628857726668158628899899-------------99
Q gi|254780877|r 704 GRTVDFRNTLIIMTSNL---GAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKED-------------MA 767 (853)
Q Consensus 704 G~~v~f~n~iii~TsN~---G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~-------------~~ 767 (853)
T Consensus 330 ~~~~~PA~F~LVaAmNPCPCG~--~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ir 407 (506)
T PRK09862 330 AKITYPARFQLVAAMNPSPTGH--YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVK 407 (506)
T ss_pred CEEEECCHHHHEHHCCCCCCCC--CCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 6798615331111037888888--99997778989999998656622130364799816899666632489898889999
Q ss_pred HHHHHHHHHHHHHHHHCC---------CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999998579---------89999889999999708982206215799999
Q gi|254780877|r 768 KIVRIQLGRVLSLIKERN---------ISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 768 ~i~~~~l~~l~~~l~~~~---------i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
T Consensus 408 ~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLr 466 (506)
T PRK09862 408 QRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999855165657998999765499978999999999965957999999999