HHsearch alignment for GI: 254780877 and conserved domain: PRK10787

Probab=98.35  E-value=2e-05  Score=63.04  Aligned_cols=174  Identities=19%  Similarity=0.400  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCC------EEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC-----C
Q ss_conf             3335789999999633677786------6895288740777999999987348998444574378873135421-----7
Q gi|254780877|r  180 VIGRDDEMRRAIQVLSRRTKNN------PVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA-----G  248 (853)
Q Consensus       180 VIGRe~EI~~~~~iL~r~~k~n------~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----g  248 (853)
T Consensus       324 HyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al----------~r~f~rislGGv~DeaeirG  393 (784)
T PRK10787        324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRG  393 (784)
T ss_pred             HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf             30657799999999999986246778779964699877246999999985----------89869980688788888256


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHH----HHHHHH---------HC----CCCEE
Q ss_conf             --454202454589999998607997699963627730266655433588----887653---------12----46604
Q gi|254780877|r  249 --AKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDAS----NLLKPS---------LA----RGELH  309 (853)
Q Consensus       249 --~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daa----n~LKP~---------La----rG~l~  309 (853)
T Consensus       394 HrrTYvgampGrii~~l~~a~~~n-Pv-~llDEiDK~-~~~-~~--Gdp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~  467 (784)
T PRK10787        394 HRRTYIGSMPGKLIQKMAKVGVKN-PL-FLLDEIDKM-SSD-MR--GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM  467 (784)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCC-CE-EEEHHHHHH-CCC-CC--CCHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEE
T ss_conf             433434436838999999748988-56-650035552-245-58--9988999984597655640003220464522258


Q ss_pred             EEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHH-HHHHHHHHHCC-----CCCCHHHHHHHHH
Q ss_conf             899744899999730011132023111115777678999999-97898654149-----6101589999986
Q gi|254780877|r  310 CIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILR-GLKERYEQHHK-----VRISDSALVSAAV  375 (853)
Q Consensus       310 ~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~-gl~~~yE~~H~-----V~i~d~al~~av~  375 (853)
T Consensus       468 Fi~--TaN~----~~ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~  533 (784)
T PRK10787        468 FVA--TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR  533 (784)
T ss_pred             EEE--ECCC----CCCCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             997--3276----77876776312155411676788999999745399999828996567439999999875