HHsearch alignment for GI: 254780877 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=99.31 E-value=2.8e-10 Score=102.49 Aligned_cols=222 Identities=18% Similarity=0.274 Sum_probs=161.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002244774034532013
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~L 646 (853)
T Consensus 203 F~~iig~S~~m~~v~~~a~r~----A~~d~pV---LI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseL 275 (513)
T PRK10820 203 FSQIVAVSPKMKHVVEQARKL----AMLSAPL---LITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESEL 275 (513)
T ss_pred HHHHEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 777510899999999999998----5989988---998989824999999999668878998268889989967899986
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf 04771120356677421132215641022021441498999999998404578879997783033155954851268764
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~ 726 (853)
T Consensus 276 FG~a~----~~~~G~fe----~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~------ 341 (513)
T PRK10820 276 FGHAP----EGKKGFFE----QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK------ 341 (513)
T ss_pred CCCCC----CCCCCCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCH------
T ss_conf 38766----68897557----85898899978365999999999999868979965998535677899962653------
Q ss_pred CCHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 03267999999999-86288577266681-586288998--999999999999999999857989999889999999708
Q gi|254780877|r 727 EDGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 727 ~~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
T Consensus 342 --------dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L~~-- 409 (513)
T PRK10820 342 --------NLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP--RPKLSADLSTVLTR-- 409 (513)
T ss_pred --------HHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHH--
T ss_conf --------099998729850889998616725588834465569999999999999975999--89847999999970--
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q ss_conf 9822062157999998733
Q gi|254780877|r 803 YDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 803 ~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 410 y~WPGNVREL~n~iera~~ 428 (513)
T PRK10820 410 YGWPGNVRQLKNAIYRALT 428 (513)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8999799999999999999