HHsearch alignment for GI: 254780877 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.55 E-value=1.3e-05 Score=64.64 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=123.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH-CCCCHHCCCC-CCCCCC---HHHHCCC
Q ss_conf 6512898726786168899999998723776530022447740345320130-4771120356-677421---1322156
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI-GSPPGYVGYE-EGGALT---EAVRRHP 670 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li-GappGYvG~~-~gg~Lt---e~vr~~P 670 (853)
T Consensus 194 Kk--nvIL~G~pGtGKT~lAk~lA~~l~g~~-~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 194 KK--NIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CC--CEEEECCCCCCHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCC
T ss_conf 88--279658999887899999999970788-778468998358866178764605688861326836999999998498
Q ss_pred C--CEEEEHHHHHCCHH-HHHHHHHHHHC-CE-----EE--CCC--CCEE-ECCCCEEEECCCHHHHHHHCCHHHHHHHH
Q ss_conf 4--10220214414989-99999998404-57-----88--799--9778-30331559548512687640326799999
Q gi|254780877|r 671 Y--QVVLFDEIEKAHSD-VHNILLQVLDD-GR-----LT--DSQ--GRTV-DFRNTLIIMTSNLGAEYLIEDGDSVHDKV 736 (853)
Q Consensus 671 ~--sVil~DEiEKah~~-v~~~llqild~-G~-----lt--d~~--G~~v-~f~n~iii~TsN~G~~~~~~~~~~~~~~~ 736 (853)
T Consensus 271 ~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta--------drs~~~~ 342 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA--------DRSLAVV 342 (459)
T ss_pred CCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC--------CHHHHHH
T ss_conf 98769998432033889999999999641256765225630036888533468865999850334--------1068878
Q ss_pred HHHHHHHCC-----HHHHCCCCCEEECC------CCCHHHHHHHHHHHHHHHHHHHHHC----CCEEEECHHHHHHHHHC
Q ss_conf 999986288-----57726668158628------8998999999999999999999857----98999988999999970
Q gi|254780877|r 737 MGIVRSAFK-----PEFLNRLDEIILFE------KLRKEDMAKIVRIQLGRVLSLIKER----NISMDFDDQVIDWLSCR 801 (853)
Q Consensus 737 ~~~l~~~f~-----peflnRid~iv~F~------~l~~~~~~~i~~~~l~~l~~~l~~~----~i~l~~~~~~~~~l~~~ 801 (853)
T Consensus 343 d~alrRrf~f~~~~pd~-----d~~~~~~~l~~~~~~~~~~~~-l~~~l~~LN~rI~~de~lLgrd~~IGHS---YF~~~ 413 (459)
T PRK11331 343 DYALRRRFSFIDIEPGF-----DTPQFRNFLLNKKAEPSFVES-LCQKMNELNQEISKEATILGKGFRIGHS---YFCCG 413 (459)
T ss_pred HHHHHHHHCCEECCCCC-----CHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCEECHH---HHCCC
T ss_conf 99998650212158986-----605554333203433147999-9999999999986321137998772103---20666
Q ss_pred C-CCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8-9822062157999998733499999970
Q gi|254780877|r 802 G-YDPSYGARPLKRVIQRYIQNPLAERVLS 830 (853)
Q Consensus 802 ~-~~~~~GaR~l~r~i~~~i~~~la~~il~ 830 (853)
T Consensus 414 ~~~~~~~~~~~L~~I~~~eIiPLLqEYfFD 443 (459)
T PRK11331 414 LEDGTSPDTQWLREIVMTDIAPLLEEYFFD 443 (459)
T ss_pred CCCCCCHHHHHHHHHHHHCHHHHHHHHCCC
T ss_conf 555664368999999985327877887059