HHsearch alignment for GI: 254780877 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=99.36 E-value=8.3e-11 Score=106.78 Aligned_cols=223 Identities=19% Similarity=0.264 Sum_probs=163.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 325 ~~l~g~s~~~~~~~~~a~~~a----~~~~p---VLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elf 397 (639)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFP---ILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFL 397 (639)
T ss_pred HHCCCCCHHHHHHHHHHHHHH----CCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 544679999999999999996----88996---89889898109999999995577789981898789898467899873
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHC
Q ss_conf 47711203566774211322156410220214414989999999984045788799977830331559548512687640
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIE 727 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~ 727 (853)
T Consensus 398 G~~~~---~~~~g~~-g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~------- 466 (639)
T PRK11388 398 GSDRT---DSENGRL-SKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA------- 466 (639)
T ss_pred CCCCC---CCCCCCC-CHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCH-------
T ss_conf 87767---6434668-624403698288467264999999999999865937856999466642799973645-------
Q ss_pred CHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
Q ss_conf 3267999999999-86288577266681-586288998--9999999999999999998579899998899999997089
Q gi|254780877|r 728 DGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGY 803 (853)
Q Consensus 728 ~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~ 803 (853)
T Consensus 467 -------~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~---~~~~~ls~~a~~~L~~--y 534 (639)
T PRK11388 467 -------DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLVS--Y 534 (639)
T ss_pred -------HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHC--C
T ss_conf -------089998749854999987674410573323253439999999999999971---9999989999999972--8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 82206215799999873
Q gi|254780877|r 804 DPSYGARPLKRVIQRYI 820 (853)
Q Consensus 804 ~~~~GaR~l~r~i~~~i 820 (853)
T Consensus 535 ~WPGNvrEL~nvl~~a~ 551 (639)
T PRK11388 535 RWPGNDFELRSVIENLA 551 (639)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 99979999999999999