HHsearch alignment for GI: 254780877 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=98.13 E-value=7.3e-05 Score=58.46 Aligned_cols=201 Identities=20% Similarity=0.250 Sum_probs=104.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH--------
Q ss_conf 853333357899999996336--7778668952887407779999999873489984445743788731354--------
Q gi|254780877|r 176 KLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGAL-------- 245 (853)
Q Consensus 176 kLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-------- 245 (853)
T Consensus 323 ~f~~l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~S-------~r~~~pfv~vnC~ai~~~~~e~e 395 (639)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNES-------ERAAGPYIAVNCQLLPDEALAEE 395 (639)
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-------CCCCCCEEEEECCCCCHHHHHHH
T ss_conf 85544679999999999999996889968988989810999999999557-------77899818987898984678998
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-------------CCEEEEE
Q ss_conf 217454202454589999998607997699963627730266655433588887653124-------------6604899
Q gi|254780877|r 246 IAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------GELHCIG 312 (853)
Q Consensus 246 ~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------G~l~~Ig 312 (853)
T Consensus 396 lfG~~-~~~~~~g~~g~~e---~A~gG-TL~LdeI~~l--------p~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiia 462 (639)
T PRK11388 396 FLGSD-RTDSENGRLSKFE---LAHGG-TLFLEKVEYL--------SVELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (639)
T ss_pred HCCCC-CCCCCCCCCCHHH---CCCCC-EEEECCHHHC--------CHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEE
T ss_conf 73877-6764346686244---03698-2884672649--------9999999999986593785699946664279997
Q ss_pred EECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 74489999973001---113202311111577767899999997898654149610158999998633320245767477
Q gi|254780877|r 313 ATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDK 389 (853)
Q Consensus 313 aTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDK 389 (853)
T Consensus 463 at~~~l-~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~---------------l~~~~~~~~~~~~ls~~ 526 (639)
T PRK11388 463 TTTADL-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNK---------------LRSLEKRFSTRLKIDDD 526 (639)
T ss_pred ECCHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCCHH
T ss_conf 364508-99987498549999876744105733232534399999999---------------99999971999998999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999998754102221457887999997
Q gi|254780877|r 390 AIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 390 AIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
T Consensus 527 a~---------~~L~~y~WPGNvrEL~nvl~~ 549 (639)
T PRK11388 527 AL---------ARLVSYRWPGNDFELRSVIEN 549 (639)
T ss_pred HH---------HHHHCCCCCCHHHHHHHHHHH
T ss_conf 99---------999728999799999999999