HHsearch alignment for GI: 254780877 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=99.39 E-value=1.9e-11 Score=111.96 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=163.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCH
Q ss_conf 77674594899999999998741012365665128987267861688999999987237765300224477403453201
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~ 645 (853)
T Consensus 4 ~~~~liG~S~~m~~v~~~~~~~----A~~~~pV---LI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~ 76 (325)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSHL----APLDKPV---LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (325)
T ss_pred CCCCCEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 7899858999999999999999----6889998---98898983799999999965886799977887798997788998
Q ss_pred HHCCCCH-HCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 3047711-203566774211322156410220214414989999999984045788799977830331559548512687
Q gi|254780877|r 646 LIGSPPG-YVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 646 LiGappG-YvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
T Consensus 77 LFG~~~g~~~~~~~~--~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~--- 151 (325)
T PRK11608 77 LFGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD--- 151 (325)
T ss_pred HCCCCCCCCCCCCCC--CCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHH---
T ss_conf 727755676775324--687343568986997374547999999999998649088579987665646887133220---
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHCCCCC-EEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEE--EECHHHHHHHH
Q ss_conf 640326799999999986288577266681-586288998--9999999999999999998579899--99889999999
Q gi|254780877|r 725 LIEDGDSVHDKVMGIVRSAFKPEFLNRLDE-IILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISM--DFDDQVIDWLS 799 (853)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~~f~peflnRid~-iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l--~~~~~~~~~l~ 799 (853)
T Consensus 152 ----------l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~~s~~a~~~L~ 218 (325)
T PRK11608 152 ----------LPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL---GLPLFPGFTERARETLL 218 (325)
T ss_pred ----------HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHH
T ss_conf ----------89999839567999856530111586845471019999999999999982---99988888999999996
Q ss_pred HCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7089822062157999998733
Q gi|254780877|r 800 CRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 800 ~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 219 ~--y~WPGNvrEL~n~ierav~ 238 (325)
T PRK11608 219 N--YRWPGNIRELKNVVERSVY 238 (325)
T ss_pred C--CCCCCHHHHHHHHHHHHHH
T ss_conf 1--9999659999999999998