HHsearch alignment for GI: 254780877 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.64 E-value=0.0047 Score=43.79 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC--CCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCC-
Q ss_conf 65128987267861688999999987237765--30022447---7403453201304771120356677421132215-
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDEN--SMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRH- 669 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~--~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~- 669 (853)
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~dp-~eL~~AL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRDE-AAMTRALTYFK 316 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECCH-HHHHHHHHHHH
T ss_conf 4171799989999888999999999986169808999806634769999999999849943-996888-99999999876
Q ss_pred ---CCCEEEEHHHHHCCHHHHH--HHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf ---6410220214414989999--99998404578879997783033155954851268764032679999999998628
Q gi|254780877|r 670 ---PYQVVLFDEIEKAHSDVHN--ILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAF 744 (853)
Q Consensus 670 ---P~sVil~DEiEKah~~v~~--~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f 744 (853)
T Consensus 317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~----------p~ev~LVLSATTK~------------~DL~eIi~rF 374 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVE----------PDYICLTLSASMKS------------KDMIEIITNF 374 (436)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC----------CCEEEEEEECCCCH------------HHHHHHHHHH
T ss_conf 3368888999298988468999999999985127----------77169999788998------------9999999972
Q ss_pred CHHHHCCCCCEEECCCCCHHH
Q ss_conf 857726668158628899899
Q gi|254780877|r 745 KPEFLNRLDEIILFEKLRKED 765 (853)
Q Consensus 745 ~peflnRid~iv~F~~l~~~~ 765 (853)
T Consensus 375 ~~--l~-id-glIfTKLDET~ 391 (436)
T PRK11889 375 KD--IH-ID-GIVFTKFDETA 391 (436)
T ss_pred CC--CC-CC-EEEEEECCCCC
T ss_conf 57--99-88-28997132568