HHsearch alignment for GI: 254780877 and conserved domain: PRK12323

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.97  E-value=1.4e-08  Score=88.75  Aligned_cols=203  Identities=23%  Similarity=0.258  Sum_probs=134.6

Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCC---------CCH-------
Q ss_conf             56998729853333357899999996336777-8668952887407779999999873489---------984-------
Q gi|254780877|r  168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGD---------IPE-------  230 (853)
Q Consensus       168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~---------vp~-------  230 (853)
T Consensus         6 lark~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~   85 (721)
T PRK12323          6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT   85 (721)
T ss_pred             HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             76540798665532859999999999971997544750279988898999999999768998667898788787765468


Q ss_pred             -HH--CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             -44--57437887313542174542024545899999986079--9-769996362773026665543358888765312
Q gi|254780877|r  231 -SL--KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLA  304 (853)
Q Consensus       231 -~l--~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~La  304 (853)
T Consensus        86 ~i~~g~~~d~~EiDaa------s~~~v--~~~r~l~~~~~y~P~~~~~KvyiiDevhmls--------~~afnalLKtlE  149 (721)
T PRK12323         86 EIDAGRFVDYIEMDAA------SNRGV--DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKTLE  149 (721)
T ss_pred             HHHCCCCCCEEEEECC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHC
T ss_conf             7756898764774367------67888--9999999854558876644699985400058--------999999998401


Q ss_pred             C--CCEEEEEEECHHHHHHHHHCCHH-HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             4--66048997448999997300111-32023111115777678999999978986541496101589999986333202
Q gi|254780877|r  305 R--GELHCIGATTLDEYRKYIEKDPA-LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI  381 (853)
Q Consensus       305 r--G~l~~IgaTT~~Eyrk~iEkD~A-l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi  381 (853)
T Consensus       150 ePP~hv~FilaTT~~--~K----ip~TilSRc~~f~~~~~~~~~i~~~l~~i~~----~E~i~~~~~al~~ia~~a~Gs~  219 (721)
T PRK12323        150 EPPPHVKFILATTDP--QK----IPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----QEGIGHEGNALRLLAQAAHGSM  219 (721)
T ss_pred             CCCCCEEEEEECCCH--HH----CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCH
T ss_conf             797553899943863--44----8588987765423478999999999999999----8399779999999999758964


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             457674778999999999875
Q gi|254780877|r  382 TDRFLPDKAIDLMDEASARVR  402 (853)
Q Consensus       382 ~~r~lPDKAIDllDeA~A~~~  402 (853)
T Consensus       220 RD------alslldQaia~~~  234 (721)
T PRK12323        220 RD------ALSLTDQAIAYSA  234 (721)
T ss_pred             HH------HHHHHHHHHHHCC
T ss_conf             76------8889999998658