HHsearch alignment for GI: 254780877 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.97 E-value=1.4e-08 Score=88.75 Aligned_cols=203 Identities=23% Similarity=0.258 Sum_probs=134.6
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCC---------CCH-------
Q ss_conf 56998729853333357899999996336777-8668952887407779999999873489---------984-------
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGD---------IPE------- 230 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~---------vp~------- 230 (853)
T Consensus 6 lark~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~ 85 (721)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT 85 (721)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 76540798665532859999999999971997544750279988898999999999768998667898788787765468
Q ss_pred -HH--CCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--C-CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC
Q ss_conf -44--57437887313542174542024545899999986079--9-769996362773026665543358888765312
Q gi|254780877|r 231 -SL--KGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED--G-EIILFIDELHVLVGAGKTDGAMDASNLLKPSLA 304 (853)
Q Consensus 231 -~l--~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~--~-~~ilfide~h~~~gaG~~~g~~Daan~LKP~La 304 (853)
T Consensus 86 ~i~~g~~~d~~EiDaa------s~~~v--~~~r~l~~~~~y~P~~~~~KvyiiDevhmls--------~~afnalLKtlE 149 (721)
T PRK12323 86 EIDAGRFVDYIEMDAA------SNRGV--DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKTLE 149 (721)
T ss_pred HHHCCCCCCEEEEECC------CCCCH--HHHHHHHHHCCCCCCCCCEEEEEEECCCCCC--------HHHHHHHHHHHC
T ss_conf 7756898764774367------67888--9999999854558876644699985400058--------999999998401
Q ss_pred C--CCEEEEEEECHHHHHHHHHCCHH-HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 4--66048997448999997300111-32023111115777678999999978986541496101589999986333202
Q gi|254780877|r 305 R--GELHCIGATTLDEYRKYIEKDPA-LARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI 381 (853)
Q Consensus 305 r--G~l~~IgaTT~~Eyrk~iEkD~A-l~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi 381 (853)
T Consensus 150 ePP~hv~FilaTT~~--~K----ip~TilSRc~~f~~~~~~~~~i~~~l~~i~~----~E~i~~~~~al~~ia~~a~Gs~ 219 (721)
T PRK12323 150 EPPPHVKFILATTDP--QK----IPVTVLSRCLQFNLKQMPPGHIVSHLDAILG----QEGIGHEGNALRLLAQAAHGSM 219 (721)
T ss_pred CCCCCEEEEEECCCH--HH----CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCH
T ss_conf 797553899943863--44----8588987765423478999999999999999----8399779999999999758964
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 457674778999999999875
Q gi|254780877|r 382 TDRFLPDKAIDLMDEASARVR 402 (853)
Q Consensus 382 ~~r~lPDKAIDllDeA~A~~~ 402 (853)
T Consensus 220 RD------alslldQaia~~~ 234 (721)
T PRK12323 220 RD------ALSLTDQAIAYSA 234 (721)
T ss_pred HH------HHHHHHHHHHHCC
T ss_conf 76------8889999998658