HHsearch alignment for GI: 254780877 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=98.53  E-value=4.6e-07  Score=76.36  Aligned_cols=105  Identities=26%  Similarity=0.413  Sum_probs=69.0

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEE
Q ss_conf             12898726786168899999998723776530022447740345320130477112035667742113221--5641022
Q gi|254780877|r  598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVL  675 (853)
Q Consensus       598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil  675 (853)
T Consensus       101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dL-----v~~L~~a------~~~g-~~~~k~l~~l~~~dLLI  168 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV-----MSRLHES------YDNG-QSGEKFLQELCKVDLLV  168 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-----HHHHHHH------HHCC-CCHHHHHHHHHCCCEEE
T ss_conf             8608998999987889999999999987996999889999-----9999999------9848-50999999973389898


Q ss_pred             EHHHH--HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf             02144--14989999999984045788799977830331559548512687
Q gi|254780877|r  676 FDEIE--KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY  724 (853)
Q Consensus       676 ~DEiE--Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~  724 (853)
T Consensus       169 IDElG~~~~s~~~~~llfqlI~~Ry~----------~~ks~IiTTNL~f~e  209 (248)
T PRK12377        169 LDEIGIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHEA  209 (248)
T ss_pred             EHHCCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHH
T ss_conf             60005788986799999999999985----------579868975899779