HHsearch alignment for GI: 254780877 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=98.53 E-value=4.6e-07 Score=76.36 Aligned_cols=105 Identities=26% Similarity=0.413 Sum_probs=69.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHC--CCCCEEE
Q ss_conf 12898726786168899999998723776530022447740345320130477112035667742113221--5641022
Q gi|254780877|r 598 MGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRR--HPYQVVL 675 (853)
Q Consensus 598 ~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~--~P~sVil 675 (853)
T Consensus 101 ~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dL-----v~~L~~a------~~~g-~~~~k~l~~l~~~dLLI 168 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV-----MSRLHES------YDNG-QSGEKFLQELCKVDLLV 168 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-----HHHHHHH------HHCC-CCHHHHHHHHHCCCEEE
T ss_conf 8608998999987889999999999987996999889999-----9999999------9848-50999999973389898
Q ss_pred EHHHH--HCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHH
Q ss_conf 02144--14989999999984045788799977830331559548512687
Q gi|254780877|r 676 FDEIE--KAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEY 724 (853)
Q Consensus 676 ~DEiE--Kah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~ 724 (853)
T Consensus 169 IDElG~~~~s~~~~~llfqlI~~Ry~----------~~ks~IiTTNL~f~e 209 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHEA 209 (248)
T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHH
T ss_conf 60005788986799999999999985----------579868975899779