HHsearch alignment for GI: 254780877 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=96.14 E-value=0.097 Score=33.10 Aligned_cols=122 Identities=23% Similarity=0.444 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE----------EH-----HHHHCCCCC
Q ss_conf 999996336777-86689528874077799999998734899844457437887----------31-----354217454
Q gi|254780877|r 188 RRAIQVLSRRTK-NNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL----------DM-----GALIAGAKF 251 (853)
Q Consensus 188 ~~~~~iL~r~~k-~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l----------d~-----~~l~ag~~~ 251 (853)
T Consensus 120 ~RiiDL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~Nh-Pe----v~livLLIDERPEEVTdm~r~v~gEVvaSTfD 194 (379)
T PRK12608 120 MRVLDLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANH-PD----IHLMVLLIDERPEEVTDMKRSVKGEVYASTFD 194 (379)
T ss_pred CCEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC-CC----CEEEEEECCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 11031004634574012745898657899999999998579-98----48999981689358888886237079997798
Q ss_pred CCHHHHHHHH------HHHHHHHCCCCEEEEECCHH------HHCC--CCCC-CCCCCHHHHHHHHH---------CCCC
Q ss_conf 2024545899------99998607997699963627------7302--6665-54335888876531---------2466
Q gi|254780877|r 252 RGEFEERLKS------LLCEIRSEDGEIILFIDELH------VLVG--AGKT-DGAMDASNLLKPSL---------ARGE 307 (853)
Q Consensus 252 rg~~e~r~~~------i~~~~~~~~~~~ilfide~h------~~~g--aG~~-~g~~Daan~LKP~L---------arG~ 307 (853)
T Consensus 195 ~~-~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~lsgg~d~~al~~pk~~Fgaar~ie~gGS 273 (379)
T PRK12608 195 RP-YDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLSGGVDARALERPKRLFGAARKIEEGGS 273 (379)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99-89999999999999999987699689996517788998753368888615778695675006898531257778866
Q ss_pred EEEEEEEC
Q ss_conf 04899744
Q gi|254780877|r 308 LHCIGATT 315 (853)
Q Consensus 308 l~~IgaTT 315 (853)
T Consensus 274 lTiiaTaL 281 (379)
T PRK12608 274 LTILATAL 281 (379)
T ss_pred CEEEEEEE
T ss_conf 32566663