HHsearch alignment for GI: 254780877 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.24 E-value=0.001 Score=49.13 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=52.8
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHCC--CCCCCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCC
Q ss_conf 512898726786168899-9999987237--7653002244---774034532013047711203566774211322156
Q gi|254780877|r 597 PMGSFMFLGPTGVGKTEL-VKSLARLLFD--DENSMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHP 670 (853)
Q Consensus 597 p~~~flf~GptGvGKTel-ak~la~~lf~--~~~~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P 670 (853)
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iP-v~vv~~~-~el~~al~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP-FYPVKDI-KKFKETLARDG 299 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-EEEEECH-HHHHHHHHHCC
T ss_conf 762999989999888999999999999974992799952665377999999999985994-5995189-99999998569
Q ss_pred CCEEEEHHHHHCCHHH
Q ss_conf 4102202144149899
Q gi|254780877|r 671 YQVVLFDEIEKAHSDV 686 (853)
Q Consensus 671 ~sVil~DEiEKah~~v 686 (853)
T Consensus 300 ~DlILIDTAGrS~rd~ 315 (432)
T PRK12724 300 SELILIDTAGYSHRNL 315 (432)
T ss_pred CCEEEEECCCCCCCCH
T ss_conf 9999992999897899