HHsearch alignment for GI: 254780877 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.24  E-value=0.001  Score=49.13  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=52.8

Q ss_pred             CCEEEEEECCCCHHHHHH-HHHHHHHHCC--CCCCCCCCCH---HHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCC
Q ss_conf             512898726786168899-9999987237--7653002244---774034532013047711203566774211322156
Q gi|254780877|r  597 PMGSFMFLGPTGVGKTEL-VKSLARLLFD--DENSMIRIDM---SEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHP  670 (853)
Q Consensus       597 p~~~flf~GptGvGKTel-ak~la~~lf~--~~~~lir~dM---sey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P  670 (853)
T Consensus       222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iP-v~vv~~~-~el~~al~~~~  299 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP-FYPVKDI-KKFKETLARDG  299 (432)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-EEEEECH-HHHHHHHHHCC
T ss_conf             762999989999888999999999999974992799952665377999999999985994-5995189-99999998569


Q ss_pred             CCEEEEHHHHHCCHHH
Q ss_conf             4102202144149899
Q gi|254780877|r  671 YQVVLFDEIEKAHSDV  686 (853)
Q Consensus       671 ~sVil~DEiEKah~~v  686 (853)
T Consensus       300 ~DlILIDTAGrS~rd~  315 (432)
T PRK12724        300 SELILIDTAGYSHRNL  315 (432)
T ss_pred             CCEEEEECCCCCCCCH
T ss_conf             9999992999897899