HHsearch alignment for GI: 254780877 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.59 E-value=1e-13 Score=130.47 Aligned_cols=181 Identities=25% Similarity=0.385 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHH
Q ss_conf 33357899999996336777866895288740777999999987348998444574378873135421745420245458
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERL 259 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~ 259 (853)
T Consensus 36 llg~g~~Lrr~i---~~~~~~S~Il~GPPGtGKTTLA~iIA~~t----------~~~F~~l--sAv~sgvk-------dl 93 (726)
T PRK13341 36 ILGEGRLLRRAI---KADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSL--NAVLAGVK-------DL 93 (726)
T ss_pred HCCCCCHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEE--ECCCCCHH-------HH
T ss_conf 428982899999---76999827888979999999999998874----------8867998--56203779-------99
Q ss_pred HHHHHHHHH----CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCE
Q ss_conf 999999860----7997699963627730266655433588887653124660489974489999973001113202311
Q gi|254780877|r 260 KSLLCEIRS----EDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQS 335 (853)
Q Consensus 260 ~~i~~~~~~----~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~ 335 (853)
T Consensus 94 r~ii~~A~~~~~~~g~~tILFIDEIHRfNK--------~QQD~LLp~vE~G~i~LIGATTENP~---F~vn~ALlSR~~v 162 (726)
T PRK13341 94 RAEVDAAKERLERHGKRTILFIDEVHRFNK--------AQQDALLPWVENGTVTLIGATTENPY---FEVNKALVSRSRL 162 (726)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHCCH--------HHHHHHHHHHCCCEEEEEEECCCCCC---EEECHHHHHHCEE
T ss_conf 999999999987459965999862542588--------78998788860683899970478974---3642988832346
Q ss_pred EECCCCCHHHHHHHHHH-HHHHHHH--HCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 11157776789999999-7898654--1496101589999986333202457674778999999999
Q gi|254780877|r 336 LLVGEPTVTDTISILRG-LKERYEQ--HHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEASA 399 (853)
Q Consensus 336 i~V~Eps~~~t~~iL~g-l~~~yE~--~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A 399 (853)
T Consensus 163 f~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GD------aR~aLN~LElav~ 223 (726)
T PRK13341 163 FRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGD------ARSLLNALELAVE 223 (726)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_conf 674389999999999999876743256678775989999999975973------9999999999997