HHsearch alignment for GI: 254780877 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.68 E-value=4.9e-15 Score=141.15 Aligned_cols=195 Identities=27% Similarity=0.391 Sum_probs=145.9
Q ss_pred HHHHHHCCCCCCCCCHHHHHH---HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf 569987298533333578999---99996336777866895288740777999999987348998444574378873135
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMR---RAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA 244 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~---~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 244 (853)
T Consensus 3 LAer~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~----------~~~f~~lnA~- 71 (417)
T PRK13342 3 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAEFEALSAV- 71 (417)
T ss_pred CHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECC-
T ss_conf 71644999888857987760897199999976999759988969998999999999986----------8988996141-
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 4217454202454589999998607--99769996362773026665543358888765312466048997448999997
Q gi|254780877|r 245 LIAGAKFRGEFEERLKSLLCEIRSE--DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 245 l~ag~~~rg~~e~r~~~i~~~~~~~--~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
T Consensus 72 -~~gv-------~dir~ii~~a~~~~~~~~tilfiDEIHRfn--------K~QQD~LLp~vE~g~iiLIgATTENP~--- 132 (417)
T PRK13342 72 -TSGV-------KDLREVIEEAKQSRLGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS--- 132 (417)
T ss_pred -CCCH-------HHHHHHHHHHHHHHCCCCEEEEEECHHHCC--------HHHHHHHHHHHHCCCEEEEEECCCCCH---
T ss_conf -0388-------999999999886314896599997820058--------899999987511265699974157922---
Q ss_pred HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 3001113202311111577767899999997898-654149610158999998633320245767477899999999
Q gi|254780877|r 323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKER-YEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~-yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
T Consensus 133 f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GD------aR~aLN~LE~a~ 203 (417)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGD------ARRALNLLELAA 203 (417)
T ss_pred HHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHH
T ss_conf 53489898565700205899999999999999877433788776999999999814985------999999999998