HHsearch alignment for GI: 254780877 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.68  E-value=4.9e-15  Score=141.15  Aligned_cols=195  Identities=27%  Similarity=0.391  Sum_probs=145.9

Q ss_pred             HHHHHHCCCCCCCCCHHHHHH---HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
Q ss_conf             569987298533333578999---99996336777866895288740777999999987348998444574378873135
Q gi|254780877|r  168 LTEEARNGKLDPVIGRDDEMR---RAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGA  244 (853)
Q Consensus       168 LTe~Ar~GkLDPVIGRe~EI~---~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~  244 (853)
T Consensus         3 LAer~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~----------~~~f~~lnA~-   71 (417)
T PRK13342          3 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAEFEALSAV-   71 (417)
T ss_pred             CHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECC-
T ss_conf             71644999888857987760897199999976999759988969998999999999986----------8988996141-


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf             4217454202454589999998607--99769996362773026665543358888765312466048997448999997
Q gi|254780877|r  245 LIAGAKFRGEFEERLKSLLCEIRSE--DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKY  322 (853)
Q Consensus       245 l~ag~~~rg~~e~r~~~i~~~~~~~--~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~  322 (853)
T Consensus        72 -~~gv-------~dir~ii~~a~~~~~~~~tilfiDEIHRfn--------K~QQD~LLp~vE~g~iiLIgATTENP~---  132 (417)
T PRK13342         72 -TSGV-------KDLREVIEEAKQSRLGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS---  132 (417)
T ss_pred             -CCCH-------HHHHHHHHHHHHHHCCCCEEEEEECHHHCC--------HHHHHHHHHHHHCCCEEEEEECCCCCH---
T ss_conf             -0388-------999999999886314896599997820058--------899999987511265699974157922---


Q ss_pred             HHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             3001113202311111577767899999997898-654149610158999998633320245767477899999999
Q gi|254780877|r  323 IEKDPALARRFQSLLVGEPTVTDTISILRGLKER-YEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS  398 (853)
Q Consensus       323 iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~-yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~  398 (853)
T Consensus       133 f~in~aLlSRc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GD------aR~aLN~LE~a~  203 (417)
T PRK13342        133 FEVNPALLSRAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGD------ARRALNLLELAA  203 (417)
T ss_pred             HHCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHH
T ss_conf             53489898565700205899999999999999877433788776999999999814985------999999999998