HHsearch alignment for GI: 254780877 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.46 E-value=4.9e-12 Score=116.80 Aligned_cols=184 Identities=22% Similarity=0.388 Sum_probs=124.4
Q ss_pred HHHCCHHHHHHH---HHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 674594899999---99999874101236566512898726786168899999998723776530022447740345320
Q gi|254780877|r 568 KSVIGQSAAVES---VSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVS 644 (853)
Q Consensus 568 ~~v~gq~~ai~~---v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs 644 (853)
T Consensus 13 de~vGQ~hllg~~~~L~~~i~--------~~~-~~s~Il~GPPG~GKTTlA~iiA~~~---~~~f~~lnA~~----~gv~ 76 (417)
T PRK13342 13 DEVVGQEHLLGPGKPLRRMIE--------AGR-LSSMILWGPPGTGKTTLARIIAGAT---DAEFEALSAVT----SGVK 76 (417)
T ss_pred HHHCCCHHHHCCCHHHHHHHH--------CCC-CCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCC----CCHH
T ss_conf 885798776089719999997--------699-9759988969998999999999986---89889961410----3889
Q ss_pred HHHCCCCHHCCCCCCCCCCHHHHC---CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 130477112035667742113221---56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 645 RLIGSPPGYVGYEEGGALTEAVRR---HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 645 ~LiGappGYvG~~~gg~Lte~vr~---~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
T Consensus 77 dir-------------~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i------------iLIgATTE-- 129 (417)
T PRK13342 77 DLR-------------EVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI------------TLIGATTE-- 129 (417)
T ss_pred HHH-------------HHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE------------EEEEECCC--
T ss_conf 999-------------999998863148965999978200588999999875112656------------99974157--
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 68764032679999999998628857726668158628899899999999999999999985798999988999999970
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCR 801 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 801 (853)
T Consensus 130 ------NP~-----------f~in~aLlSRc-~vf~l~~L~~~di~~iL~ral~~-e---~~~~~~i~i~~~al~~i~~~ 187 (417)
T PRK13342 130 ------NPS-----------FEVNPALLSRA-QVFELKPLSEEDLEQLLKRALED-E---RGLGRKLELDDEALDALARL 187 (417)
T ss_pred ------CCH-----------HHCCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHHHHHHHH
T ss_conf ------922-----------53489898565-70020589999999999999987-7---43378877699999999981
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 898220621579999987
Q gi|254780877|r 802 GYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 802 ~~~~~~GaR~l~r~i~~~ 819 (853)
T Consensus 188 s---~GDaR~aLN~LE~a 202 (417)
T PRK13342 188 A---DGDARRALNLLELA 202 (417)
T ss_pred C---CCCHHHHHHHHHHH
T ss_conf 4---98599999999999