HHsearch alignment for GI: 254780877 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.98 E-value=0.18 Score=31.00 Aligned_cols=90 Identities=28% Similarity=0.450 Sum_probs=56.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC--CCCCCCHHHCCCCHHCCCCCC-----CCCCHHHHCCCC
Q ss_conf 898726786168899999998723776530022-447740--345320130477112035667-----742113221564
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM--EKHSVSRLIGSPPGYVGYEEG-----GALTEAVRRHPY 671 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~--e~~~vs~LiGappGYvG~~~g-----g~Lte~vr~~P~ 671 (853)
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~-~eRIvtIEDt~EL~l~~~n~V~l~~-~~~---~~g~~~vt~~~Ll~~aLRmrPD 238 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTLELVIPHENHVRLLY-SKN---GAGLGAVTAEHLLQASLRMRPD 238 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCCEEEEEE-CCC---CCCCCCCCHHHHHHHHHCCCCC
T ss_conf 8999888986199999999962896-5527996115002589999689996-589---8885839799999998607998
Q ss_pred CEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 102202144149899999999840457
Q gi|254780877|r 672 QVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 672 sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
T Consensus 239 R-IivGEvR--G~EA~d-~L~A~nTGH 261 (343)
T PRK13851 239 R-ILLGEMR--DDAAWA-YLSEVVSGH 261 (343)
T ss_pred E-EEEEEEC--CHHHHH-HHHHHHCCC
T ss_conf 2-8998526--699999-999984699