>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=98.93 E-value=1.9e-08 Score=87.64 Aligned_cols=176 Identities=23% Similarity=0.365 Sum_probs=96.7 Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130 Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853) Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853) T Consensus 4 ~eFiGQ~~vk~~L~l~I~AAk----~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg---~~-l~i--------------T 61 (305) T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAK----MRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VN-LKI--------------T 61 (305) T ss_pred HHCCCCHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHC---CC-CEE--------------E T ss_conf 110582889999999999998----2489734166317568746789999999838---93-267--------------4 Q ss_pred CCCCHHCCCCC----CCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEE--CCC---CCEEECC---CCEEE Q ss_conf 47711203566----774211322156410220214414989999999984045788--799---9778303---31559 Q gi|254780877|r 648 GSPPGYVGYEE----GGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLT--DSQ---GRTVDFR---NTLII 715 (853) Q Consensus 648 GappGYvG~~~----gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~lt--d~~---G~~v~f~---n~iii 715 (853) T Consensus 62 sGP~----L~kPgDlaaiLt~---L~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvG 134 (305) T TIGR00635 62 SGPA----LEKPGDLAAILTN---LEEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305) T ss_pred ECCC----CCCHHHHHHHHHH---CCCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCC T ss_conf 0675----5475789999970---56896310125650483345310530012178778712898525760686944200 Q ss_pred ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 54851268764032679999999998628857726668158628899899999999999999999985798999988999 Q gi|254780877|r 716 MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVI 795 (853) Q Consensus 716 ~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~ 795 (853) T Consensus 135 ATTR~G~-------------l--------t~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A---------~~L~~ei~~~~a 184 (305) T TIGR00635 135 ATTRAGM-------------L--------TSPLRDRFGIILRLEFYTPEELAEIVSRSA---------GLLNIEIEQEAA 184 (305) T ss_pred CCCCCCC-------------C--------CCCHHHHHHHHHHCCCCCHHHHHHHHHHHH---------HHCCCCCCHHHH T ss_conf 0034774-------------1--------031334544745402689878999987533---------441430077899 Q ss_pred HHHHHCC Q ss_conf 9999708 Q gi|254780877|r 796 DWLSCRG 802 (853) Q Consensus 796 ~~l~~~~ 802 (853) T Consensus 185 ~~IArrS 191 (305) T TIGR00635 185 LEIARRS 191 (305) T ss_pred HHHHHHC T ss_conf 9998754

HHsearch alignment for GI: 254780877 and conserved domain: TIGR00635