HHsearch alignment for GI: 254780877 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.42  E-value=4.4e-06  Score=68.41  Aligned_cols=138  Identities=26%  Similarity=0.412  Sum_probs=100.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             66895288740777999999987348998444574378873135421745420245458999999860799769996362
Q gi|254780877|r  201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDEL  280 (853)
Q Consensus       201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~  280 (853)
T Consensus       158 GvLLyGPPGtGKTLlAKAvA~et----------~ATFIrvVgSElV--~KyIGEGArLV~~~F~LAkEK-aPsIiFIDEi  224 (364)
T TIGR01242       158 GVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV--RKYIGEGARLVREVFELAKEK-APSIIFIDEI  224 (364)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEEHHHHH--HHHHCCHHHHHHHHHHHHHCC-CCCEEEEECH
T ss_conf             65700757976889999863145----------5126886044444--444133168999999985306-9816861013


Q ss_pred             HHHCCCCCCC--CCCC--HHH-------HHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCEE-ECCCCCHHHH
Q ss_conf             7730266655--4335--888-------8765312466048997448999997300111320--23111-1157776789
Q gi|254780877|r  281 HVLVGAGKTD--GAMD--ASN-------LLKPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQSL-LVGEPTVTDT  346 (853)
Q Consensus       281 h~~~gaG~~~--g~~D--aan-------~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~i-~V~Eps~~~t  346 (853)
T Consensus       225 DAi-aakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~Di-----lDPA~LRPGRFDR~IEVPlP~~~GR  298 (364)
T TIGR01242       225 DAI-AAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI-----LDPAILRPGRFDRIIEVPLPDFEGR  298 (364)
T ss_pred             HHH-HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHH-----CCCCCCCCCCCCCEEECCCCCCCCH
T ss_conf             335-4321146778731578899999975248887676168872076202-----0432148886132573169783220


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999978986
Q gi|254780877|r  347 ISILRGLKERY  357 (853)
Q Consensus       347 ~~iL~gl~~~y  357 (853)
T Consensus       299 ~eIlkiHTr~~  309 (364)
T TIGR01242       299 LEILKIHTRKM  309 (364)
T ss_pred             HHHHHHHHCCC
T ss_conf             56655521000