HHsearch alignment for GI: 254780877 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.17 E-value=6.1e-05 Score=59.13 Aligned_cols=291 Identities=20% Similarity=0.349 Sum_probs=170.7
Q ss_pred HHCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9828996338999999861-8876689999973999899999-9999997459547897777069899999999999999
Q gi|254780877|r 22 LAQGHQNLVPEHVLHIFLE-DEQGAVYSLIQCSGGDIAQLKD-YNQTVLSKIPKVTGGGAQVYLSQPLAVILSKSEEIAK 99 (853)
Q Consensus 22 ~~~~H~~Vt~EHLLlaLL~-~~~s~i~~iL~~~gvd~~~L~~-~le~~L~k~~k~~~~~~~~~~S~~l~rvL~~A~~~A~ 99 (853)
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~thG----~~Gadlaal~~eaam~~l 485 (980)
T TIGR01243 410 KDERFEKEKIEKIIEKVSKANSEDEIKEILKEDGNVYVEVRNRLIDKLLDKLAEVTHG----FVGADLAALAKEAAMAAL 485 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHH
T ss_conf 6556678899999998863102678999975012124678999999999988654236----203559999899999999
Q ss_pred H--CCCCCCCHHHHHHHHHHCCCCH-HHHHHHCCCCHHHHHHHHHHHHCCCCCCC--CCCC---CCCCHHHHHHHHHHHH
Q ss_conf 7--1987025999876687277517-88999759998999999998737788787--7754---6761078864435699
Q gi|254780877|r 100 K--SGDSFVTAEKFLLAMVMETGGI-GESLKKCGLKFSRLEESIKKLRKGRVADS--VNAE---QGFDALKKYCRDLTEE 171 (853)
Q Consensus 100 ~--~g~~~I~~ehLLlAIl~e~~s~-a~iL~~~gi~~~~l~e~i~~~~~~~~~~~--~~~e---~~~~~L~ky~~DLTe~ 171 (853)
T Consensus 486 rr~~~eg~i~~ea---------~~iP~~vl~~lkvt~~df~ealk~~~P~~~re~~~evP~v~W~diGGlee~kq~lre- 555 (980)
T TIGR01243 486 RRLIREGKINLEA---------EEIPKEVLEELKVTMKDFKEALKMVEPSALREVLVEVPNVKWEDIGGLEEVKQELRE- 555 (980)
T ss_pred HHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHH-
T ss_conf 9874027745026---------775799998732228999999851062341100023375110014667899999987-
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC
Q ss_conf 87298533333578999999963367778668952887407779999999873489984445743788731354217454
Q gi|254780877|r 172 ARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF 251 (853)
Q Consensus 172 Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~ 251 (853)
T Consensus 556 aveW---Pl--k---~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es----------~anfi~v~GPe~l--skW 615 (980)
T TIGR01243 556 AVEW---PL--K---APEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEIL--SKW 615 (980)
T ss_pred HHHC---CC--C---HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----------CCCEEEECCCHHH--HHH
T ss_conf 7523---44--4---0589986078899734874689861688888774014----------5646774073122--344
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-CC---CC-HHHH----HHHHHCCCCEEEEEEECHHHHHHH
Q ss_conf 202454589999998607997699963627730266655-43---35-8888----765312466048997448999997
Q gi|254780877|r 252 RGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-GA---MD-ASNL----LKPSLARGELHCIGATTLDEYRKY 322 (853)
Q Consensus 252 rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g~---~D-aan~----LKP~LarG~l~~IgaTT~~Eyrk~ 322 (853)
T Consensus 616 vGese~~ir~if~~arq~a-P~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi--- 691 (980)
T TIGR01243 616 VGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDI--- 691 (980)
T ss_pred HCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC---
T ss_conf 0324799999999864128-737873021110541244210010268999999986404434366589861588742---
Q ss_pred HHCCHHHHH--CCCE-EECCCCCHHHHHHHHHH
Q ss_conf 300111320--2311-11157776789999999
Q gi|254780877|r 323 IEKDPALAR--RFQS-LLVGEPTVTDTISILRG 352 (853)
Q Consensus 323 iEkD~Al~R--RFq~-i~V~Eps~~~t~~iL~g 352 (853)
T Consensus 692 --~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ 722 (980)
T TIGR01243 692 --LDPALLRPGRLDRLILVPAPDEEARLEIFKI 722 (980)
T ss_pred --CCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf --3610048874121686059855676767655