HHsearch alignment for GI: 254780877 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.53 E-value=0.0023 Score=46.36 Aligned_cols=160 Identities=22% Similarity=0.376 Sum_probs=80.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCC-CHHHHCCCCCCC----HHHCCCCHHCCCCCCCCCCHHHHC
Q ss_conf 6651289872678616889999999872377-6530022-447740345320----130477112035667742113221
Q gi|254780877|r 595 QRPMGSFMFLGPTGVGKTELVKSLARLLFDD-ENSMIRI-DMSEYMEKHSVS----RLIGSPPGYVGYEEGGALTEAVRR 668 (853)
Q Consensus 595 ~~p~~~flf~GptGvGKTelak~la~~lf~~-~~~lir~-dMsey~e~~~vs----~LiGappGYvG~~~gg~Lte~vr~ 668 (853)
T Consensus 124 ~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTIEDPIEyvh~~~~sli~QREvG~DT~--sF~--~ALraALRe 199 (350)
T TIGR01420 124 ERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITIEDPIEYVHKNKRSLINQREVGLDTL--SFA--NALRAALRE 199 (350)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCHH--HHH--HHHHHHHCC
T ss_conf 3669938987688986789999999787403888825631773141047702454362467545--799--997684102
Q ss_pred CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHH
Q ss_conf 56410220214414989999999984045788799977830331559548512687640326799999999986288577
Q gi|254780877|r 669 HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEF 748 (853)
Q Consensus 669 ~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~pef 748 (853)
T Consensus 200 DP-DvILiGE~R--D~ET~~~AL~AAETGHL------------------------------------V~gTLHTnsA~~t 240 (350)
T TIGR01420 200 DP-DVILIGEMR--DLETVELALTAAETGHL------------------------------------VFGTLHTNSAAKT 240 (350)
T ss_pred CC-CEEEEECCC--CHHHHHHHHHHHHHCCH------------------------------------HHHHHHHHHHHHH
T ss_conf 89-889982556--27899999987421315------------------------------------6766664238887
Q ss_pred HCCCCCEEECCCCCHHH-HHH-HHHHHHHHHHHHHHHC----CCE-----EEECHHHHHHHHH
Q ss_conf 26668158628899899-999-9999999999999857----989-----9998899999997
Q gi|254780877|r 749 LNRLDEIILFEKLRKED-MAK-IVRIQLGRVLSLIKER----NIS-----MDFDDQVIDWLSC 800 (853)
Q Consensus 749 lnRid~iv~F~~l~~~~-~~~-i~~~~l~~l~~~l~~~----~i~-----l~~~~~~~~~l~~ 800 (853)
T Consensus 241 i~RI---id~FP~~~~~qiR~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~~Tpav~~lIre 300 (350)
T TIGR01420 241 IERI---IDVFPAEEQEQIRTQLAESLVAVISQRLLPKKNGGGRVLAVEILINTPAVRNLIRE 300 (350)
T ss_pred HHHH---HCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEECCCHHHHHHHCC
T ss_conf 6777---42597756689999998767877000542233896258888752158789996028